| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,124,357 – 18,124,461 |
| Length | 104 |
| Max. P | 0.659066 |
| Location | 18,124,357 – 18,124,461 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 85.62 |
| Shannon entropy | 0.19825 |
| G+C content | 0.46901 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -26.28 |
| Energy contribution | -26.17 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18124357 104 + 22422827 AAAAAAGGGGUUGGGGGCUGCCAAAGUGUUGGAGCCAAUAACUUCAAGGCCAUGAAAAUUGGCAACUAAUUAUGGUACGAGUUACCCCAAAUCUCAUUCCACUA ......(((((((((((((.((((....))))))))..((((((....(((((((.....(....)...)))))))..)))))).))).))))))......... ( -33.40, z-score = -2.01, R) >droSim1.chrX_random 220981 97 + 5698898 ------GAAAAAGGGGGCAGCCAAAGUGGUGGAGCCAAUGACUUCAAGGCCAUGACGAUUGGCAACUAAUUAUGGUACGAGUCACCCCAAAUCCUAUUCCACU- ------......((((((.(((.....)))...)))..((((((....(((((((.....(....)...)))))))..)))))).)))...............- ( -28.00, z-score = -0.99, R) >droSec1.super_8 436901 98 + 3762037 -----GAAAAAGGGGGGCUGCCAAAGUGGUGGAGCCAAUGACUUCAAGGCCAUGACGAUUGGCAACUAAUUAUGGUACGAGUUACCCCAAAUCCCAUUCCACU- -----......((((((((.(((......)))))))..((((((....(((((((.....(....)...)))))))..))))))))))...............- ( -30.60, z-score = -1.22, R) >consensus ______GAAAAAGGGGGCUGCCAAAGUGGUGGAGCCAAUGACUUCAAGGCCAUGACGAUUGGCAACUAAUUAUGGUACGAGUUACCCCAAAUCCCAUUCCACU_ ............(((((((.(((......)))))))..((((((....(((((((.....(....)...)))))))..)))))).)))................ (-26.28 = -26.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:43 2011