Locus 15247

Sequence ID dm3.chrX
Location 18,124,039 – 18,124,194
Length 155
Max. P 0.962506
window21003 window21004

overview

Window 3

Location 18,124,039 – 18,124,136
Length 97
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 73.12
Shannon entropy 0.47854
G+C content 0.55525
Mean single sequence MFE -35.89
Consensus MFE -14.57
Energy contribution -15.60
Covariance contribution 1.03
Combinations/Pair 1.19
Mean z-score -2.66
Structure conservation index 0.41
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.71
SVM RNA-class probability 0.962506
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18124039 97 + 22422827
UAAUGCACUUUUGCCUGGU---GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGGUGGGGAGCAUCGCCCCCGUU-CCGGGCUGGAAUCCCAGUUUGCAUAU------------
..(((((....((((.(..---..).)))).......((((((((((((....))))))))))))((((.....-..))))(((....)))...)))))..------------ ( -45.90, z-score =  -4.02, R)
>droSim1.chrX_random 220663 97 + 5698898
UAAUGCACUUUUGCCUGGU---GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGGUGGGGAGCAUCGCCCCCGUU-CCGGGCUGGAAUCCCAGUUUGCAUAU------------
..(((((....((((.(..---..).)))).......((((((((((((....))))))))))))((((.....-..))))(((....)))...)))))..------------ ( -45.90, z-score =  -4.02, R)
>droSec1.super_8 436583 97 + 3762037
UAAUGCACUUUUGCCUGGU---GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGGUGGGGAGCAUCGCCCCCGUU-CCGGGCUGGAAUCCCAGUUUGCAUAU------------
..(((((....((((.(..---..).)))).......((((((((((((....))))))))))))((((.....-..))))(((....)))...)))))..------------ ( -45.90, z-score =  -4.02, R)
>droYak2.chrX 16752912 82 + 21770863
UAAUGCACUUUUGCCUGGU---GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGCUG-------UCGC---------CGGGCUGGAAUCCCAGUUUGCAUAU------------
..(((((.....(((((((---(((.(((........(((((.....)))))))))-------))))---------)))))(((....)))...)))))..------------ ( -32.50, z-score =  -3.06, R)
>droEre2.scaffold_4690 8452695 95 + 18748788
UAAUGCACUUUUGCCUGGU---GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGGCGUC--GCCCCGCCCCCGUU-CCGGGCUGGAAUCCCAGUUUGCAUAU------------
..(((((.....((((((.---(((.((.........(((((.....)))))((((..--....)))))).)))-))))))(((....)))...)))))..------------ ( -33.50, z-score =  -1.60, R)
>droWil1.scaffold_180702 1330804 113 + 4511350
UUAUGCACUAUUUCUGGUUUCCGACCCAACUUUUCAUCAUCCACCAACCAUCCACCACAUUCCCCCCCCCCUUCGUCGUCUUCGUUUCGCAAUGUGGCAACCACUGAGUGAUG
.....((((.....(((((...((.........))...................(((((((............((.((....))...)).))))))).)))))...))))... ( -11.62, z-score =   0.76, R)
>consensus
UAAUGCACUUUUGCCUGGU___GACUGGCAUUUUUGAGAUGCUCCCCGCGUCGGUGGGGAGCAUCGCCCCCGUU_CCGGGCUGGAAUCCCAGUUUGCAUAU____________
..((((.....((((.(.......).)))).......(((((.....))))).........................(((((((....))))))))))).............. (-14.57 = -15.60 +   1.03)

alignment

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secondary structure

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dotplot

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Window 4

Location 18,124,097 – 18,124,194
Length 97
Sequences 7
Columns 112
Reading direction reverse
Mean pairwise identity 71.42
Shannon entropy 0.52146
G+C content 0.43251
Mean single sequence MFE -26.19
Consensus MFE -11.57
Energy contribution -13.07
Covariance contribution 1.50
Combinations/Pair 1.36
Mean z-score -1.59
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.646058
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18124097 97 - 22422827
-----CUUUCGGGGCAUUUGG----AAAACUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUGCAAACUGGGAUUCCAGCCCGGAACGGGGGCGAUG
-----.((((((((((((..(----(.....))..)))))...--......---..((((((((((.....)-)))))))))((((....)))))))))))........... ( -30.40, z-score =  -2.52, R)
>droSim1.chrX_random 220721 97 - 5698898
-----CUUUCGGGGCAUUUGG----AAAACUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUGCAAACUGGGAUUCCAGCCCGGAACGGGGGCGAUG
-----.((((((((((((..(----(.....))..)))))...--......---..((((((((((.....)-)))))))))((((....)))))))))))........... ( -30.40, z-score =  -2.52, R)
>droSec1.super_8 436641 97 - 3762037
-----CUUUCGGGGCAUUUGG----AAAACUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUGCAAACUGGGAUUCCAGCCCGGAACGGGGGCGAUG
-----.((((((((((((..(----(.....))..)))))...--......---..((((((((((.....)-)))))))))((((....)))))))))))........... ( -30.40, z-score =  -2.52, R)
>droYak2.chrX 16752968 84 - 21770863
-----CUUUCGGGGCAUUUGG----AAAACUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUGCAAACUGGGAUUCCAGCCCGG-------------
-----....(((((((((..(----(.....))..)))))...--......---..((((((((((.....)-)))))))))((((....)))))))).------------- ( -28.00, z-score =  -3.60, R)
>droEre2.scaffold_4690 8452751 97 - 18748788
-----CUUUCGGGGCAUUUGG----AAAAGUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUGCAAACUGGGAUUCCAGCCCGGAACGGGGGCGGGG
-----.(..(((.(((((..(----(.....))..)))))...--......---..((((((((((.....)-))))))))))))..)..((.((((.......)))).)). ( -31.50, z-score =  -2.61, R)
>droAna3.scaffold_13248 3716032 86 + 4840945
-----GAGCAAGGACCUGUGGUGGAGAAACUUUUGAAUGCAUU--UCAAUU---AUUUUGCAUGUUCAUCAG-AUAUUCAAAGGGGGG---AGAUGUGGA------------
-----..(((....(((.(..((((....((..((((((((..--......---....)))))..)))..))-...))))..).))).---...)))...------------ ( -15.30, z-score =   1.19, R)
>droWil1.scaffold_180702 1330877 109 - 4511350
GGCAGUUGUAAGGAUGUUUUGU---GUCUAUUUUAAUUAUUUUCCCCAGUUGUAAUCCUCCAUGUUCAUCAGCAUCACUCAGUGGUUGCCACAUUGCGAAACGAAGACGACG
....(((((.....((((((((---.......................((((.....(.....).....))))........((((...))))...))))))))...))))). ( -17.30, z-score =   1.47, R)
>consensus
_____CUUUCGGGGCAUUUGG____AAAACUUUUGAAUGCAUU__UCAAUU___AUUUUGCAUGUUCAUCAG_AUAUGCAAACUGGGAUUCCAGCCCGGAACGGGGGCGAUG
........((((((((((..(...........)..)))))................(((((((((.(....).)))))))))((((....)))))))))............. (-11.57 = -13.07 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:42 2011