| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,123,790 – 18,123,885 |
| Length | 95 |
| Max. P | 0.859279 |
| Location | 18,123,790 – 18,123,885 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.84 |
| Shannon entropy | 0.31105 |
| G+C content | 0.53649 |
| Mean single sequence MFE | -32.01 |
| Consensus MFE | -21.50 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18123790 95 + 22422827 GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAGUCAUGCCGUGGCAAUCCAACCCACCCACUCU------------CACUGCCACUGCUACUGCUCGUACUCA .............(.((((((.(..(((..((((((((......((((.........)))).......------------.))))))))..).))..))))))).). ( -35.04, z-score = -3.02, R) >droEre2.scaffold_4690 8452452 83 + 18748788 GAUUAAAUCAAUAGUGUGCGAUGCGGUGUGGUGACAUUCUUACCGGGGCAAUCCGGCCCACCCACUCC------------------------CACUGCUCGUCCUCA .............(.(..(((.((((((((((((.....))))))((((......)))).........------------------------)))))))))..).). ( -26.70, z-score = -1.43, R) >droSec1.super_8 436322 107 + 3762037 GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCAUGGCAGUUCAACCCACCCACUCCCACAUUCACUCCCACUGCCACUGCCACUGCUCGUACUCA .............(.((((((.((((((((((((((....)))).(((.(((...........))).)))..............))))).)))))...)))))).). ( -31.20, z-score = -1.37, R) >droSim1.chrX_random 220402 107 + 5698898 GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCGUGGCAGUCCAACCCACCCACUCCCACAUUCACUCCCACUGCCACUGCCACUGCUCGUACUCA .............(.((((((.((((((((((((((....))))((((.(((...........))).)))).............))))).)))))...)))))).). ( -35.10, z-score = -2.35, R) >consensus GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCGUGGCAAUCCAACCCACCCACUCC____________CACUGCCACUGCCACUGCUCGUACUCA .............(.((((((.((((((.(((((......(((....))).......)))))......................((....)))))))))))))).). (-21.50 = -22.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:41 2011