| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,122,855 – 18,122,959 |
| Length | 104 |
| Max. P | 0.699006 |
| Location | 18,122,855 – 18,122,959 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 91.25 |
| Shannon entropy | 0.15995 |
| G+C content | 0.46634 |
| Mean single sequence MFE | -31.36 |
| Consensus MFE | -25.30 |
| Energy contribution | -25.62 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18122855 104 + 22422827 AUUUUUCUAGUUUUUCAGUUUGCUCACUUGGGAAACUAGCUCCUGAAUCCUUGGGACGCCCCUUAAUUGGAUGCUCCUGCCGUGGAGCUCGAGACAUGUAAUAA ......(((((((..((((......)).))..)))))))(((....((((..(((....)))......))))(((((......)))))..)))........... ( -29.00, z-score = -1.46, R) >droEre2.scaffold_4690 8451556 103 + 18748788 AUUUUUUUAGUUCUCCAAGUGCGCAACUUGGGAAACUAGCUCCUGAAUCCUUGGGACGCCCCU-AAUUGGAUGCUCCUGCCGUGGGGGCCAAGACAUGUAAAAG ......((((((..((((((.....))))))..)))))).(((..(....)..))).((((((-(...((.....)).....)))))))............... ( -34.10, z-score = -1.75, R) >droYak2.chrX 16751717 104 + 21770863 AUUUUCUUAGUUUUGCAGCUUGCUCACUUGGGAAACUAGCUGCUGAAUCCUUGGGAUGCCCCUUAAUUGGAUGCUCCUGCCGUGGAGCUCGAGACAUGUAAUAU .........(((((((((((..(((....))).....)))))).((((((..(((....)))......))))(((((......))))))))))))......... ( -30.50, z-score = -1.45, R) >droSec1.super_8 435433 104 + 3762037 AUUUUUCUAGUUUUCCAGUUUGCUCACUUGGGAAACUAGCUCCUGAAUCCUUGGGACGCCCCUUAAUUGGAUGCUCCUGCCGUGGAGCUCGAGACAUGUAAUAA ......(((((((((((((......)).)))))))))))(((....((((..(((....)))......))))(((((......)))))..)))........... ( -31.60, z-score = -2.27, R) >droSim1.chrX_random 219514 104 + 5698898 AUUUUUCUAGUUUUCCAGUUUGCUCACUUGGGAAACUAGCUCCUGAAUCCUUGGGACGCCCCUUAAUUGGAUGCUCCUGCCGUGGAGCUCGAGACAUGUAAUAA ......(((((((((((((......)).)))))))))))(((....((((..(((....)))......))))(((((......)))))..)))........... ( -31.60, z-score = -2.27, R) >consensus AUUUUUCUAGUUUUCCAGUUUGCUCACUUGGGAAACUAGCUCCUGAAUCCUUGGGACGCCCCUUAAUUGGAUGCUCCUGCCGUGGAGCUCGAGACAUGUAAUAA ......((((((((((((.........))))))))))))(((....((((..(((....)))......))))(((((......)))))..)))........... (-25.30 = -25.62 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:40 2011