| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,120,905 – 18,120,962 |
| Length | 57 |
| Max. P | 0.977497 |
| Location | 18,120,905 – 18,120,962 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 88.55 |
| Shannon entropy | 0.19481 |
| G+C content | 0.55186 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18120905 57 + 22422827 CCAGACAGUUGCAGGCGGGCACAGCCUGCAAAUAUCAGCUGUCUCAACCGGUUCUGG------ ..(((((((((...((((((...))))))......)))))))))...(((....)))------ ( -21.80, z-score = -2.39, R) >droSim1.chrX_random 4683349 56 + 5698898 CCUGACA-UUGCUGGCUGGCACAGCCUGCAAUUAUCAGCUGUAUCAACCGGUUCUAG------ .((((.(-((((.(((((...))))).)))))..))))...................------ ( -15.60, z-score = -0.98, R) >droSec1.super_8 433495 57 + 3762037 CCAGACAGUUGCAGGCGGGCACAGCCUGCAAAUAUCAGCUGUCUCAACCGGUUCUGG------ ..(((((((((...((((((...))))))......)))))))))...(((....)))------ ( -21.80, z-score = -2.39, R) >droYak2.chrX 16749751 63 + 21770863 ACAGACAGUUGCAGGCGGGCACAGCCUGCAAAUAUCAGCUGUCUCAAACGGUUCUGGUUCUGG .(((((((((((((((.......)))))))).....((((((.....)))))))))..)))). ( -22.80, z-score = -2.37, R) >droEre2.scaffold_4690 8449739 57 + 18748788 CCAAACAGUUGCAGGCGGGCACAACCUGCAAAUAUCAGCUGUCUCAACCGGUUCUGG------ ....(((((((...(((((.....)))))......))))))).....(((....)))------ ( -15.10, z-score = -0.87, R) >consensus CCAGACAGUUGCAGGCGGGCACAGCCUGCAAAUAUCAGCUGUCUCAACCGGUUCUGG______ ..(((((((((...((((((...))))))......)))))))))................... (-15.62 = -16.82 + 1.20)
| Location | 18,120,905 – 18,120,962 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 88.55 |
| Shannon entropy | 0.19481 |
| G+C content | 0.55186 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.62 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18120905 57 - 22422827 ------CCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGG ------(((((..((((((...))))))....((((((((.......))))))))...))))) ( -23.20, z-score = -3.03, R) >droSim1.chrX_random 4683349 56 - 5698898 ------CUAGAACCGGUUGAUACAGCUGAUAAUUGCAGGCUGUGCCAGCCAGCAA-UGUCAGG ------...................((((((.((((.(((((...))))).))))-)))))). ( -18.30, z-score = -1.57, R) >droSec1.super_8 433495 57 - 3762037 ------CCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGG ------(((((..((((((...))))))....((((((((.......))))))))...))))) ( -23.20, z-score = -3.03, R) >droYak2.chrX 16749751 63 - 21770863 CCAGAACCAGAACCGUUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGU .......((((....))))((((((.......((((((((.......)))))))))))))).. ( -19.31, z-score = -2.05, R) >droEre2.scaffold_4690 8449739 57 - 18748788 ------CCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGUUGUGCCCGCCUGCAACUGUUUGG ------(((((..((((((...))))))....((((((((.......))))))))...))))) ( -18.40, z-score = -1.75, R) >consensus ______CCAGAACCGGUUGAGACAGCUGAUAUUUGCAGGCUGUGCCCGCCUGCAACUGUCUGG ......(((((..((((((...))))))....((((((((.......))))))))...))))) (-18.30 = -18.62 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:39 2011