| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,113,393 – 18,113,500 |
| Length | 107 |
| Max. P | 0.716193 |
| Location | 18,113,393 – 18,113,500 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.59 |
| Shannon entropy | 0.48424 |
| G+C content | 0.31381 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -10.93 |
| Energy contribution | -11.18 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18113393 107 - 22422827 CACGUCAUG---GCAUAAGCCAUGAAAA-------AAUUAGGAAAAUUCGUUCAAUACCAUUUAAAAACUUAAAAUGCUU-AGGCUGUAUAAGCCUUAAAACGGUGACAAAUUCAUGU (((.(((((---((....)))))))...-------.............((((......(((((.........)))))...-(((((.....)))))...)))))))............ ( -21.80, z-score = -2.06, R) >droSim1.chrX_random 215470 110 - 5698898 UACGUAUUGCUUGGAAAAAGCAGGAAAA-------AAUUAGGAAUUCUUUUUAAAUAUCAUUUAGAAACAUAAAAUGUUU-AAGCUUUUCAAGCUAUAAAACGGUGACAAAUUGAAGU ....(((.((((((((..((((((((..-------.........))))).((((((((..((((......))))))))))-))))))))))))).)))....(....).......... ( -17.40, z-score = -0.84, R) >droSec1.super_8 425547 110 - 3762037 UACGUCUUGCUUGGAAAAAGCAGGAAAA-------AAUGAGGAAUUCUUUUUAAAUAUCAUAUAGAAACAUAAAAUGUUU-GGGCUUUACAAGCUAAAAAACGGUGACAAAUUCAAGU ....((((((((.....))))))))...-------......(((((..............................((((-.((((.....))))...))))(....).))))).... ( -20.10, z-score = -1.67, R) >droYak2.chrX 16740930 107 - 21770863 UACGCUGUGGUUGCAGAAAGCAUGAACGACGAACUAAUAGGAAAAACCCUUUUAAUAGCAUUUUAAAACUGAAAAUGUUUCAGGCUGUAAAAGCCGUAAAAUGGUGA----------- ..((((((..((((........((((........(((.(((......))).)))...(((((((.......)))))))))))((((.....)))))))).)))))).----------- ( -22.30, z-score = -1.09, R) >consensus UACGUCUUGCUUGCAAAAAGCAGGAAAA_______AAUUAGGAAAACUCUUUAAAUAUCAUUUAAAAACAUAAAAUGUUU_AGGCUGUACAAGCCAUAAAACGGUGACAAAUUCAAGU (((.((((((((.....))))))))..................................................(((((..((((.....))))...))))))))............ (-10.93 = -11.18 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:37 2011