| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,105,918 – 18,106,030 |
| Length | 112 |
| Max. P | 0.659993 |
| Location | 18,105,918 – 18,106,030 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 97.77 |
| Shannon entropy | 0.04025 |
| G+C content | 0.26964 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -20.94 |
| Energy contribution | -21.26 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18105918 112 - 22422827 GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACGAAUAGUUAUAUUUUUAAUUCUAGUUAUAAUUCG ..............(((((((.((..(((((((((...((((((((((((......)))))).((((((.....))))))))))))....)))))))))..)).))))))). ( -23.30, z-score = -1.62, R) >droSim1.chrX_random 207557 112 - 5698898 GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACGAAUAGUUAUAUUUUUAAUUCUAGUUAUAAUUCG ..............(((((((.((..(((((((((...((((((((((((......)))))).((((((.....))))))))))))....)))))))))..)).))))))). ( -23.30, z-score = -1.62, R) >droSec1.super_8 417979 112 - 3762037 GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACGAAUAGUUAUAUUUUUAAUUCUAGUUAUAAUUCG ..............(((((((.((..(((((((((...((((((((((((......)))))).((((((.....))))))))))))....)))))))))..)).))))))). ( -23.30, z-score = -1.62, R) >droYak2.chrX 16732556 112 - 21770863 GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACUUAUAGUUCUAUUUUUAAUUCUAGUUAUAGUUCG ..............(((((((.((..(((((((((..(((((((((((((......))))))...((((.....))))..)))))))...)))))))))..)).))))))). ( -24.20, z-score = -2.04, R) >droEre2.scaffold_4690 8435788 112 - 18748788 GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACAAAUAGUUCUAUUUUUAAUUCUAGUUAUAAUUGG ...............((((((.((..(((((((((..(((((((((((((......)))))).((((((.....)))))))))))))...)))))))))..)).)))))).. ( -23.20, z-score = -1.87, R) >consensus GACGAAACUGUAUUGAAUUGUUGCGUGAAUUGAGAUUGAAUUGUUAAUUGUUAAGUUAAUUAAUUGUAGUCGCACUACGAAUAGUUAUAUUUUUAAUUCUAGUUAUAAUUCG ..............(((((((.((..(((((((((.((((((((((((((......)))))).((((((.....)))))))))))).)).)))))))))..)).))))))). (-20.94 = -21.26 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:36 2011