| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,089,746 – 18,089,859 |
| Length | 113 |
| Max. P | 0.888422 |
| Location | 18,089,746 – 18,089,859 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.46 |
| Shannon entropy | 0.59082 |
| G+C content | 0.40391 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -14.34 |
| Energy contribution | -16.15 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18089746 113 + 22422827 ---AUAAUAGUGAUCCAGAUUUAGUUGAGUGUAAGGGAAAAAAAUCAGAAGACGAUCGAAGGGUUGUGGAAAUGGGCUGAUAGCCAGUCUGCAUUUCCCGGCUUGUUGGUUCUUUU ---........((.((((....(((((........................((((((....))))))((((((((((((.....)))))..))))))))))))..)))).)).... ( -29.00, z-score = -0.87, R) >droWil1.scaffold_180702 1291942 93 + 4511350 UUAAUUAUGAUCUUAAGACUUUAGAUUUUUAUCCAACCACUAAUAUGGUUUUCUACCACAGUAACGAGACAGUGCACUGGCCAUCAGUGUCCC----------------------- .......((.((((...(((.((((.........(((((......))))).))))....)))...))))))(..(((((.....)))))..).----------------------- ( -14.00, z-score = -0.03, R) >droSim1.chrX_random 191210 112 + 5698898 ---AUAAUAGUGAUUCAGAUUUUGUUAAGUGUAAGGGAAAAAA-UCACAAGACGAUCGAAGGGUUGUGGAAAUGGGCUGAUAGCCAGUCUGCAUUUCCCGUCUUGUUGGUCCUUUU ---....(((..(........)..))).....((((((.....-..(((((((((((....))))(.((((((((((((.....)))))..)))))))))))))))...)))))). ( -30.50, z-score = -1.65, R) >droSec1.super_8 401955 112 + 3762037 ---AUAAAAGUGAUACAUAUUUUGUUAAGUGUAAGAGAAAAAA-UCACAAGAUGAUCGAAGGGUUGUGGAAAUGGGCUGAUAGCCAGUCUGCAUUUCCCGUCUUGUUGGUCCUUUU ---..(((((.(((..((((((....))))))...........-..(((((((((((....)))...((((((((((((.....)))))..)))))))))))))))..)))))))) ( -28.20, z-score = -1.72, R) >droEre2.scaffold_4690 8420647 112 + 18748788 ---AUGAUAGUGAUGCAGGUUUUGCUGAGUGUAAAGGAAAAAA-UGAGAAGACGAUCGAAUGGUUGUGGAAAUGGACUGAUAGCCAGUCUGCAUUGCCCGUCUUGUUGGUUCUUUU ---....(((..(........)..))).....(((((((..((-..(((..((((((....))))))((.(((((((((.....)))))..))))..)).)))..))..))))))) ( -27.40, z-score = -0.95, R) >droYak2.chrX 16716544 115 + 21770863 AUGCAAAUAGUAUGGCAGAUUUUGUUGAGUGUAAGGGAAAAAA-UCAGAAGACGAUCGAAGGGUUGUGGAAAUGGGCUGAUAGCCAGUCUGCAUUUCCCGUCUGGUUGGUCCUUUU .(((..........)))...............((((((...((-(((((..((((((....))))))((((((((((((.....)))))..)))))))..)))))))..)))))). ( -34.60, z-score = -2.08, R) >consensus ___AUAAUAGUGAUACAGAUUUUGUUGAGUGUAAGGGAAAAAA_UCAGAAGACGAUCGAAGGGUUGUGGAAAUGGGCUGAUAGCCAGUCUGCAUUUCCCGUCUUGUUGGUCCUUUU ................................((((((.............((((((....))))))((((((((((((.....)))))..)))))))...........)))))). (-14.34 = -16.15 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:33 2011