| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,086,797 – 18,086,963 |
| Length | 166 |
| Max. P | 0.572309 |
| Location | 18,086,797 – 18,086,963 |
|---|---|
| Length | 166 |
| Sequences | 5 |
| Columns | 167 |
| Reading direction | forward |
| Mean pairwise identity | 71.69 |
| Shannon entropy | 0.51184 |
| G+C content | 0.42927 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -21.74 |
| Energy contribution | -23.54 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18086797 166 + 22422827 UCAUAUAUCAGUGGAAAAGUUCUCACAGUGCUCGCAUUUCUCGACUAAAGCGCAAUCCUUUCAACUGCUCAUUUGCCCCGCAACUGGCCAUUCAU-UAUUUCUGGGAUUUCUGGGAUUUGGUCAGCAAAUUCCAUUUCACUUAGCUGUGGAUGGCCAACAAAUCCUU ..........((((.............(((((................))))).............((......)).))))...(((((((((((-.....(((((.....(((((((((.....))))))))).....)))))..))))))))))).......... ( -40.99, z-score = -0.92, R) >droMoj3.scaffold_6473 3515191 131 + 16943266 --------------------UCAUAUUCCAGACCCAUUAGAAGGCUAAGCAUACGUCAGUUCGAAAGC----CUUUCCCCUAACUAGUAAUUAAGGUAUUCCCAAUACUAGUUAUAAUUAGUAGAUAAUCUAGUCUCUGAUUAUUAAUAGGACUC------------ --------------------......(((..........(((((((...(..((....))..)..)))----))))....(((((((((.....((....))...)))))))))(((((((.((((......)))))))))))......)))...------------ ( -27.70, z-score = -2.01, R) >droEre2.scaffold_4690 8418143 166 + 18748788 UCAUAUAUCAGUGGAGCAGUUCUCACUGUGCUCGCAUUUCUGGGCUGAAGCGCAAUCCUUUCAACUGCUCAUUUGCCCCGCAACUGGCCAUUCAU-UAUUUCUGGGAUUUCUGGGAUUUGGUCAGCAAAUUCCAUUUCACUUAGCUGUGGAUGGCCAACAAAUCCUU .............((((((((.....(((((((((........)).).))))))........))))))))..((((...)))).(((((((((((-.....(((((.....(((((((((.....))))))))).....)))))..))))))))))).......... ( -49.82, z-score = -1.58, R) >droYak2.chrX 16714032 166 + 21770863 UCAUAUAUCAGUGGCGAAGUUCUCACAGUGCUCGCAUUUCUGGGCUAAAGCGCAAUCCUUUCAACUGCUCAUUUGGCCCGCAACUGGCCAUUCAU-UAUUUCUGGGAUUUCUGGGAUUUGGUCAGCAAAUUCCAUUUCACUUAGCUGUGGAUGGCCGACAAAUCCUU .......(((((.((((.((.(.....).))))))......(((((((((.(((...........))).).))))))))...)))((((((((((-.....(((((.....(((((((((.....))))))))).....)))))..))))))))))))......... ( -49.80, z-score = -1.73, R) >droSec1.super_8 399437 166 + 3762037 UCAUAUAUCAGUGGCAAAGUUCUCACAGUGCUCGCAUUUCUGGGCUAAAGCGCAAUCCUUUCAACUGCUCAUUUCCCCCGCAACUGGCCAUUCAU-UAUUUCUGGGAUUUCUGGGAUUUGGUCAGCAAAUUCCAUUUCACUUAGCUGUGGAUCGCCAACAAAUCCUU ..........((((((..((....))..))).)))......(((..((((.(((...........))).).)))..))).....((((.((((((-.....(((((.....(((((((((.....))))))))).....)))))..)))))).)))).......... ( -36.20, z-score = 0.48, R) >consensus UCAUAUAUCAGUGGAAAAGUUCUCACAGUGCUCGCAUUUCUGGGCUAAAGCGCAAUCCUUUCAACUGCUCAUUUGCCCCGCAACUGGCCAUUCAU_UAUUUCUGGGAUUUCUGGGAUUUGGUCAGCAAAUUCCAUUUCACUUAGCUGUGGAUGGCCAACAAAUCCUU ...........................(((((.((........))...)))))...............................(((((((((((......(((((.....(((((((((.....))))))))).....)))))..))))))))))).......... (-21.74 = -23.54 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:31 2011