Locus 15235

Sequence ID dm3.chrX
Location 18,085,724 – 18,085,844
Length 120
Max. P 0.732489
window20988 window20989

overview

Window 8

Location 18,085,724 – 18,085,844
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.42
Shannon entropy 0.15021
G+C content 0.29667
Mean single sequence MFE -23.32
Consensus MFE -13.98
Energy contribution -14.46
Covariance contribution 0.48
Combinations/Pair 1.05
Mean z-score -2.57
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chrX 18085724 120 + 22422827
ACUGUCACACAUUGUCGUAGAUACAAGAUAGAUUUAUAUCUUGCAGAUAAAAUAAAUUCAAACCUAUCCUCGAAUGAAUUUCAAUUCAUAGCAUUUUGUGUGAACAUUUUACAUAAAUUG
..(((((((((...(((..(((((((((((......)))))))..((..........)).....))))..)))((((((....)))))).......)))))).))).............. ( -23.50, z-score =  -2.36, R)
>droSim1.chrX_random 187602 120 + 5698898
AUUGUCACACAUUGUCGUAGAUACAAGAUAGAUUUAUAUCUUGCAGAUAAAAUAAAUUCAAACCUAUCCUCGAAUGAAUUCCAAUUCAUAGCAUUUUGUGUGACCAUUUUACAUAAAUUG
...((((((((...(((..(((((((((((......)))))))..((..........)).....))))..)))((((((....)))))).......))))))))................ ( -25.80, z-score =  -3.45, R)
>droSec1.super_8 397284 120 + 3762037
AUUGUCACACAUUGUCGUAGAUACAAGAUAGAUUUAUAUCUUGCAGAUAAAAUAAAUUCAAACCUAUCCUCGAAUGAAUUCCAAUUCAUAGCAUUUUGUGUGACCAUUUUACAUAAAUUG
...((((((((...(((..(((((((((((......)))))))..((..........)).....))))..)))((((((....)))))).......))))))))................ ( -25.80, z-score =  -3.45, R)
>droYak2.chrX 16712943 120 + 21770863
ACUUUCACACAUUGUCGUAGCUGCAAAAUAGAAUUAUAUCUUGCAGAUAAAAUAAAUUCAAACAUAUCCUCGAAUGAAUACCAAUUCCUACCAUUUUGUGUGACCAUUUUACAUAAAUUG
....(((((((..((.((((((((((.(((......))).)))))).........................((((........)))))))).))..)))))))................. ( -24.10, z-score =  -3.98, R)
>droEre2.scaffold_4690 8417127 120 + 18748788
AUUUGCAGACAGUGCCGUAGUUACAAGAUAGAAUUGUAUCUUGCAGAUAAAAUAAGUUCAAACAUAUACUCGAAUUAAUACCAAUUCAUACCGUUUGGUGUGACCAUUUUACAUAAAUUG
.(((((.....(((.......)))((((((......)))))))))))((((((.(((((............))))).........(((((((....)))))))..))))))......... ( -17.40, z-score =   0.39, R)
>consensus
AUUGUCACACAUUGUCGUAGAUACAAGAUAGAUUUAUAUCUUGCAGAUAAAAUAAAUUCAAACCUAUCCUCGAAUGAAUUCCAAUUCAUAGCAUUUUGUGUGACCAUUUUACAUAAAUUG
....(((((((..((........(((((((......)))))))............................((((........)))).....))..)))))))................. (-13.98 = -14.46 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 18,085,724 – 18,085,844
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.42
Shannon entropy 0.15021
G+C content 0.29667
Mean single sequence MFE -27.62
Consensus MFE -19.82
Energy contribution -20.94
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -2.34
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.732489
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18085724 120 - 22422827
CAAUUUAUGUAAAAUGUUCACACAAAAUGCUAUGAAUUGAAAUUCAUUCGAGGAUAGGUUUGAAUUUAUUUUAUCUGCAAGAUAUAAAUCUAUCUUGUAUCUACGACAAUGUGUGACAGU
..............(((.((((((..(((..(((((((.((((..(((....)))..)))).)))))))..))).(((((((((......)))))))))..........))))))))).. ( -27.50, z-score =  -2.29, R)
>droSim1.chrX_random 187602 120 - 5698898
CAAUUUAUGUAAAAUGGUCACACAAAAUGCUAUGAAUUGGAAUUCAUUCGAGGAUAGGUUUGAAUUUAUUUUAUCUGCAAGAUAUAAAUCUAUCUUGUAUCUACGACAAUGUGUGACAAU
................((((((((..(((..(((((((.((((..(((....)))..)))).)))))))..))).(((((((((......)))))))))..........))))))))... ( -30.70, z-score =  -3.42, R)
>droSec1.super_8 397284 120 - 3762037
CAAUUUAUGUAAAAUGGUCACACAAAAUGCUAUGAAUUGGAAUUCAUUCGAGGAUAGGUUUGAAUUUAUUUUAUCUGCAAGAUAUAAAUCUAUCUUGUAUCUACGACAAUGUGUGACAAU
................((((((((..(((..(((((((.((((..(((....)))..)))).)))))))..))).(((((((((......)))))))))..........))))))))... ( -30.70, z-score =  -3.42, R)
>droYak2.chrX 16712943 120 - 21770863
CAAUUUAUGUAAAAUGGUCACACAAAAUGGUAGGAAUUGGUAUUCAUUCGAGGAUAUGUUUGAAUUUAUUUUAUCUGCAAGAUAUAAUUCUAUUUUGCAGCUACGACAAUGUGUGAAAGU
.............((..(((((((...(.((((((((....))))(((((((......))))))).........((((((((((......)))))))))))))).)...)))))))..)) ( -27.60, z-score =  -2.04, R)
>droEre2.scaffold_4690 8417127 120 - 18748788
CAAUUUAUGUAAAAUGGUCACACCAAACGGUAUGAAUUGGUAUUAAUUCGAGUAUAUGUUUGAACUUAUUUUAUCUGCAAGAUACAAUUCUAUCUUGUAACUACGGCACUGUCUGCAAAU
((((((((((....(((.....)))....))))))))))(((....((((((......))))))...........(((((((((......)))))))))..))).(((.....))).... ( -21.60, z-score =  -0.51, R)
>consensus
CAAUUUAUGUAAAAUGGUCACACAAAAUGCUAUGAAUUGGAAUUCAUUCGAGGAUAGGUUUGAAUUUAUUUUAUCUGCAAGAUAUAAAUCUAUCUUGUAUCUACGACAAUGUGUGACAAU
.................(((((((.......(((((((.((((..(((....)))..)))).)))))))......(((((((((......)))))))))..........))))))).... (-19.82 = -20.94 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:30 2011