| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,084,447 – 18,084,555 |
| Length | 108 |
| Max. P | 0.560485 |
| Location | 18,084,447 – 18,084,555 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.12 |
| Shannon entropy | 0.28124 |
| G+C content | 0.34878 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -12.93 |
| Energy contribution | -12.81 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18084447 108 - 22422827 GCAUUACAACUGAAGCGAAAUAAAUGGAUAGAUAUUCAAGAGAAGUUGAA----UAUGUGUCAGGGAAAAUAUAGUGAAACAUCUUUGGGGCACUACAAGUCGAUUAGCAUU .........((((..(((........((((.((((((((......)))))----))).))))..........(((((...((....))...)))))....))).)))).... ( -20.90, z-score = -1.34, R) >droEre2.scaffold_4690 8415998 109 - 18748788 GCAUUACAACUGAAGCGCAAUAAAUGGAUAAAUAUUCAAGACAACUUGAGAAACAACUUGCCAGAGUAAAUAUACUAAAACAUCUUUAGGAC---ACAAGUCGAUUGGAAUU ......(((((((((.........(((.......((((((....))))))..........))).((((....)))).......))))))(((---....)))..)))..... ( -14.13, z-score = -0.43, R) >droYak2.chrX 16711623 98 - 21770863 GCAUUACAACUGAAGCGGAAUAAAUGGAUAAAUAUUCAAGAGAACUUGAA----UAUGCGCCAGGGAAAACAUA----------UUUGGGGCACCACAAAUCGAUUACAAUU ((.(((....))).))......(((.(((..(((((((((....))))))----)))((.(((((.........----------))))).)).......))).)))...... ( -19.50, z-score = -2.33, R) >droSec1.super_8 396000 108 - 3762037 GCAUUACAACUGAAGCGAAAUAAAUGGAUAAAUGUUCAAGAGAACUUGAA----UAUGUGCCAAGGAAAAUAUAGUAAAACAUCUUUGGCGCACUACAAGUCGAUUAGCAUU ((.(((....))).))......(((.(((..(((((((((....))))))----)))((((((((((...............)))))))))).......))).)))...... ( -25.76, z-score = -3.12, R) >droSim1.chrX_random 186304 108 - 5698898 GCAUUACAACUGAAGCGAAAUAAAUGGAUAAAUGUUCAAGAGAACUUGAA----UAUGUGCCAGGGAAAAUAUAGUAAAACAUCUUUGGCGCACUACAAGUCGAUUAGCAUU ((.(((....))).))......(((.(((..(((((((((....))))))----)))((((((((((...............)))))))))).......))).)))...... ( -25.36, z-score = -2.75, R) >consensus GCAUUACAACUGAAGCGAAAUAAAUGGAUAAAUAUUCAAGAGAACUUGAA____UAUGUGCCAGGGAAAAUAUAGUAAAACAUCUUUGGGGCACUACAAGUCGAUUAGCAUU ((.(((....))).))......(((.(((.....((((((....))))))......(((.((((((.................)))))).)))......))).)))...... (-12.93 = -12.81 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:28 2011