| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,084,168 – 18,084,271 |
| Length | 103 |
| Max. P | 0.992731 |
| Location | 18,084,168 – 18,084,271 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 64.91 |
| Shannon entropy | 0.59695 |
| G+C content | 0.35338 |
| Mean single sequence MFE | -26.31 |
| Consensus MFE | -11.60 |
| Energy contribution | -12.24 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.992731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18084168 103 + 22422827 ------------------AAAGCUAUUCAUGAGCUGUCCUAUCAGCUUAUAAUUUUUUAAUUCAUUUCCCUCGAUUGCGGCGUUCUCUUUUUGA-AGAU--AAUGCUGUAAUAGAUAAUGUUGU ------------------..........((((((((......))))))))............((((....((.(((((((((((.((((....)-))).--))))))))))).)).)))).... ( -26.50, z-score = -3.52, R) >droSim1.chrU 410792 121 - 15797150 AAAGCUCCUCAUUGUGUGGGGGCUAUUCAUGAGCUGUCCUAUCAGCUUAUAAUUUUUUAAUUCAUUUCCCUCUCUAGCGGCGUUCUCUUUUUGA-AGAU--AAUGCUGUAAUAGAUAAUCUUGU ..((((((.(((...)))))))))....((((((((......))))))))......................((((((((((((.((((....)-))).--))))))))..))))......... ( -33.30, z-score = -3.28, R) >droSec1.super_8 395639 121 + 3762037 AAAGCUCCUCAUUUUGUGGGGGCUAUUCAUGAGCUGUCCUAUCAGCUUAUAAUUUUUUAAUUCAUUUCCCUCGCUAGCGGCGUUCUCUUUUUGA-AGAU--AAUGCUGUAAUAGAUAAUCUUGU ..((((((.(((...)))))))))....((((((((......)))))))).......................(((((((((((.((((....)-))).--))))))))..))).......... ( -32.00, z-score = -2.61, R) >droYak2.chrX 16711375 107 + 21770863 ---------------CAAUCUCCUAUUCAUGAGCUGUCCUAUCAGCUUAUAAUUUUUUAAUUCAUUUCCCUCGCUGGCGGCGUUCUCUUUUUGCCAGAA--AAUGCUAUAAUGGAUAAUGUUGU ---------------((((.........((((((((......)))))))).........(((((((.......(((((((.(......).)))))))..--........)))))))...)))). ( -21.73, z-score = -1.53, R) >droWil1.scaffold_180702 1286572 94 + 4511350 -----------------------------AGAGUGGGCGUGA-GAUACACAUAUUUUUCUCUUCUCUUUUUUUCUGCUGGUUUUUUUUUUCUUCCAGCUUAAAUUCAAGAUCAAAUGAAUAUGU -----------------------------...(((..(....-).)))((((((((......(((.....(((..(((((.............)))))..)))....)))......)))))))) ( -18.02, z-score = -1.04, R) >consensus __________________GGGGCUAUUCAUGAGCUGUCCUAUCAGCUUAUAAUUUUUUAAUUCAUUUCCCUCGCUAGCGGCGUUCUCUUUUUGA_AGAU__AAUGCUGUAAUAGAUAAUCUUGU ............................((((((((......))))))))..........................((((((((.(((.......)))...))))))))............... (-11.60 = -12.24 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:27 2011