| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,065,815 – 18,065,869 |
| Length | 54 |
| Max. P | 0.976156 |
| Location | 18,065,815 – 18,065,869 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 98.77 |
| Shannon entropy | 0.01701 |
| G+C content | 0.38272 |
| Mean single sequence MFE | -7.40 |
| Consensus MFE | -7.40 |
| Energy contribution | -7.40 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.976156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18065815 54 + 22422827 AUCUGUAUAUUCUGCUUUGCCUUGUUUUCCGUUAAGCGUUAUACGUUCCCAACA ....(((((...(((((.((..........)).))))).))))).......... ( -7.20, z-score = -2.13, R) >droYak2.chrX 16691649 54 + 21770863 AUCUGUAUAUUCUGCUUUGCCUUGUUUUCCGUUAAGCGUUAUACGUUCCCAACA ....(((((...(((((.((..........)).))))).))))).......... ( -7.20, z-score = -2.13, R) >droEre2.scaffold_4690 8394199 54 + 18748788 AUCUGUAUAUUCUGCUUUGCAUUGUUUUCCGUUAAGCGUUAUACGUUCCCAACA ....(((((...(((((.((..........)).))))).))))).......... ( -7.80, z-score = -2.02, R) >consensus AUCUGUAUAUUCUGCUUUGCCUUGUUUUCCGUUAAGCGUUAUACGUUCCCAACA ....(((((...(((((.((..........)).))))).))))).......... ( -7.40 = -7.40 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:23 2011