| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,763,358 – 11,763,478 |
| Length | 120 |
| Max. P | 0.984010 |
| Location | 11,763,358 – 11,763,478 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.08 |
| Shannon entropy | 0.06687 |
| G+C content | 0.31574 |
| Mean single sequence MFE | -19.71 |
| Consensus MFE | -18.39 |
| Energy contribution | -18.66 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.984010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11763358 120 + 23011544 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAGAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.64, R) >droSim1.chr2L_random 482548 120 + 909653 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAGAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.64, R) >droSec1.super_3 7152899 120 + 7220098 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAGAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.64, R) >droYak2.chr2L 8183612 120 + 22324452 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAGAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.64, R) >droEre2.scaffold_4929 12987776 120 - 26641161 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAGAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.64, R) >droAna3.scaffold_12916 9470578 120 - 16180835 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAUACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.96, R) >dp4.chr4_group3 2635606 120 + 11692001 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUACUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.88, R) >droPer1.super_1 4110190 120 + 10282868 GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUACUCACUUG (((((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).)))))))......)).(((((.....))))) ( -20.10, z-score = -2.88, R) >droWil1.scaffold_180772 5240009 120 - 8906247 ACAUCUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG ((((............(((........)))(((((..((((((.....((((((((.......))))))))....))))))..)))))....)))).........(((((.....))))) ( -16.90, z-score = -1.93, R) >droVir3.scaffold_12963 6355911 120 + 20206255 GCACAUAUUCCUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG ((..............(((........)))(((((..((((((.....((((((((.......))))))))....))))))..)))))..............)).(((((.....))))) ( -19.10, z-score = -2.57, R) >droMoj3.scaffold_6500 25496532 120 + 32352404 GUAGAGAUUCCUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG (((((.(((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..)))))...))).))))).....(((((.....))))) ( -20.50, z-score = -2.34, R) >droGri2.scaffold_15252 9585619 118 + 17193109 --GCAUUUUCCUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACCGAAACCGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG --(((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).))))))).........(((((.....))))) ( -19.20, z-score = -2.67, R) >consensus GCACAUUUUCUUUACAGCCAUUUACCAGGCGAUUUACGUAAAUCUUUUAUUUAUACAGAAAACGUAUAAGUUGCAAUUUAUCAAAAUCUAAAAUGUUUACCCGCACAAGUUAUUCACUUG ..(((((((.......(((........)))(((((..((((((.....((((((((.......))))))))....))))))..))))).))))))).........(((((.....))))) (-18.39 = -18.66 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:35 2011