| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,054,174 – 18,054,274 |
| Length | 100 |
| Max. P | 0.625604 |
| Location | 18,054,174 – 18,054,274 |
|---|---|
| Length | 100 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.21 |
| Shannon entropy | 0.60842 |
| G+C content | 0.49824 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18054174 100 + 22422827 UUCUCUGGUGGCAGAGAG---GAGAAAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACAGAGGAAAACGCCCCCACCAGCC------------- ....(((((((..(((.(---(...(((((((...((....)))))))))...)).)))((((...((......(....)...))...))))..)))))))..------------- ( -26.60, z-score = -1.57, R) >droPer1.super_39 22218 95 - 745454 CCCUGGAGGGGCAGGAUGCCAGUGCAGAAAAACAAUGGCAGCUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAGUGUGGCCUCCUUUGCC--------------------- ....(((((((((((.(((((.((........)).))))).))).......((((.((((((.....))).))))))).....))).)))))...--------------------- ( -30.60, z-score = 0.09, R) >dp4.chrXL_group3a 24952 95 + 2690836 CCCUGGAGGGGCAGGAUGCCAGUGCAGAAAAACAAUGGCAGCUUAUUUUCAUGCCAUUCGCGUCAACCGCAGAAGGCAGUGUGGCCUCCUUUGCC--------------------- ....(((((((((((.(((((.((........)).))))).))).......((((.((((((.....))).))))))).....))).)))))...--------------------- ( -30.60, z-score = 0.20, R) >droAna3.scaffold_13248 3620115 92 - 4840945 UAGUACAGCAACAGAAAA---AAAAAAAACACAAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACCGCCCACACUUAACC--------------------- ..((...((.........---.............(((....))).......((((.((((((.....))).)))))))...))..))........--------------------- ( -15.50, z-score = -2.04, R) >droEre2.scaffold_4690 8383111 99 + 18748788 UUCUCUGGCGGAAGAGAG---GAGGUAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACACAGGGAAACGCCCCCAC-AGCC------------- (((((((((((..(((.(---((((((.((....(((....)))....)).)))).))).).))..))))....(....).)))))))..........-....------------- ( -27.30, z-score = -1.47, R) >droYak2.chrX 16680068 99 + 21770863 UUCUCUGGAGGAAGAGAG---GAGUAAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACACAGGGAAACGCCCCCAC-AGCC------------- .(((((......)))))(---(.(((((((((...((....)))))))))))(((.((((((.....))).))))))......(((.....)))))..-....------------- ( -26.60, z-score = -2.02, R) >droSec1.super_8 366311 94 + 3762037 UUCUCUGGAGGCAGAGAG---GAGAAAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACAGAGGGAACCGCCCCCA------------------- .((((((....))))))(---(...(((((((...((....))))))))).((((.((((((.....))).))))))).....(((.....))))).------------------- ( -26.80, z-score = -1.86, R) >droSim1.chrX_random 4644097 94 + 5698898 UUCUCUGGAGGCAGAGAG---GAAAAAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACAGAGGGAACCGCCCCCA------------------- .((((((....))))))(---(...(((((((...((....))))))))).((((.((((((.....))).))))))).....(((.....))))).------------------- ( -26.80, z-score = -2.01, R) >droMoj3.scaffold_6473 3504596 112 + 16943266 GUCACUCGUGUCUGUCUGCCUGGGCAAA----CAAAGGCAACUUAUUUUUAUGCUAUGCGCGUCAGUGGCAGCAGGCAAUACAAAUAGAGCGAGAGAGUGAGAGGGAGAGGGAGGC .((((((.((((((.(((((..(((...----..(((....)))........((.....)))))...))))))))))).................))))))............... ( -32.47, z-score = -0.21, R) >consensus UUCUCUGGAGGCAGAGAG___GAGAAAAAAUACAAAGGCAACUUAUUUUUAUGCCAUUCGCGUCAACCGCAGAAGGCAACAGAGGGAACCGCCCCCA___________________ ..................................(((....))).......((((.((((((.....))).)))))))...................................... (-11.68 = -11.72 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:20 2011