| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,037,954 – 18,038,071 |
| Length | 117 |
| Max. P | 0.701420 |
| Location | 18,037,954 – 18,038,071 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.53 |
| Shannon entropy | 0.21983 |
| G+C content | 0.47503 |
| Mean single sequence MFE | -38.42 |
| Consensus MFE | -28.38 |
| Energy contribution | -29.77 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18037954 117 + 22422827 ACCGCCCAUUUGGGUGGCAAAUGAAUUUGUUGUGUGCGAA--UUGUUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGCCGUCUUCCAUUUACACAGCAUACUUUUAGGG- .((((((....))))))....((((..(((((((((((..--.(((..((((....)))))))..)))(((.((((...((...))...)))))))....))))))))....))))...- ( -37.00, z-score = -1.86, R) >droAna3.scaffold_13248 3597007 116 - 4840945 AUCGCCCGGUCGG---CCAAAUGAAUUUGUUUUGUGGGGAAUUUGUUGGGAAAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGUUAUC-CUUGUCUACCUAUCCCUGUUCUGGGUG ..(((((((...(---(.((((......)))).))(((((......((((((((((((((.(....).))))))))))...((((((.....-.)))))).)))))))))...))))))) ( -36.20, z-score = -1.13, R) >droEre2.scaffold_4690 8367447 117 + 18748788 ACCGCCCAUUUGGGUGUCUAAUGAAUUUGUUGUGUGCGAA--UUGUUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGGCAGCCGUCUCCCAUUUACACAGCAUACUUUUAGGG- ..(((((....)))))(((((......(((((((((((..--.(((..((((....)))))))..)))(((.((((...((...))...)))))))....)))))))).....))))).- ( -39.00, z-score = -2.25, R) >droYak2.chrX 16660677 117 + 21770863 ACCGCCCAUUUGGGUGGCAAAUGAAUUUGUUGUGUGCGAA--UUGUUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGCCGUCUCCCAUUUACACAGCAUACUUUUAGGG- .((((((....))))))....((((..(((((((((((..--.(((..((((....)))))))..)))(((.((((...((...))...)))))))....))))))))....))))...- ( -39.90, z-score = -2.55, R) >droSec1.super_8 347859 117 + 3762037 ACCGCCCCUUUGGGUGGCAAAUGAAUUUGUUGUGUGCGAA--UUGGUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGCCGUCUCCCAUUUACACAGCAUACUUUUAGGG- .....((((..(((((((..(((((((((((.((((((..--...((.((((....)))))).)))))))))))))))))(((((....)))))...........)).)))))..))))- ( -39.20, z-score = -1.86, R) >droSim1.chrX_random 155914 117 + 5698898 ACCGCCCCUUUGGGUGGCAAAUGAAUUUGUUGUGUGCGAA--UUGGUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGCCGUCUCCCAUUUACACAGCAUACUUUUAGGG- .....((((..(((((((..(((((((((((.((((((..--...((.((((....)))))).)))))))))))))))))(((((....)))))...........)).)))))..))))- ( -39.20, z-score = -1.86, R) >consensus ACCGCCCAUUUGGGUGGCAAAUGAAUUUGUUGUGUGCGAA__UUGUUUGGACAUUUGUCCACAUGCGCGGGCAGAUUUAUGAGACAGCCGUCUCCCAUUUACACAGCAUACUUUUAGGG_ .((((((....))))))...(((((((((((.((((((.....((..(((((....))))))))))))))))))))))))(((((....))))).......................... (-28.38 = -29.77 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:18 2011