| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,034,116 – 18,034,216 |
| Length | 100 |
| Max. P | 0.564607 |
| Location | 18,034,116 – 18,034,216 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.28467 |
| G+C content | 0.31635 |
| Mean single sequence MFE | -16.00 |
| Consensus MFE | -11.45 |
| Energy contribution | -11.57 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18034116 100 - 22422827 AGUUUAUUUUUUAGAUACUUGAAAAAAUGGAAUUUUUUCAACUUUUUUGAAGCAAGUUCGUCUGUCCAGGGUAUCUCUCUGUUCAUGCGAAUACUCGUAC ........(((((((...((((((((((...))))))))))....)))))))...((((((.((..(((((.....)))))..)).))))))........ ( -22.20, z-score = -2.05, R) >droSec1.super_8 344050 84 - 3762037 AACUUA---UUUAGCUACUACAAAGAAUGGAAUUUUUCCACUUUUUUUAAAG-------------CCAGGGUAUAUCUCUGUUUAUACGAAUACUCGUAC ......---....(((..((.(((((.((((.....)))).))))).)).))-------------)(((((.....)))))....(((((....))))). ( -15.00, z-score = -1.86, R) >droSim1.chrX_random 152088 84 - 5698898 AACUUA---UUUAUCUACUUCAAAGAAUGGAAUUUUUCCACUUUUUUUAAAG-------------CCAGGGUAUAUCUCUGUUUAUACGAAUACUCGCAC ....((---(((.....(((.((((((((((.....))))..)))))).)))-------------.(((((.....))))).......)))))....... ( -10.80, z-score = -0.76, R) >consensus AACUUA___UUUAGCUACUUCAAAGAAUGGAAUUUUUCCACUUUUUUUAAAG_____________CCAGGGUAUAUCUCUGUUUAUACGAAUACUCGUAC .................(((.((((((((((.....))))..)))))).)))..............(((((.....)))))....(((((....))))). (-11.45 = -11.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:17 2011