| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,013,103 – 18,013,202 |
| Length | 99 |
| Max. P | 0.757302 |
| Location | 18,013,103 – 18,013,202 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.91 |
| Shannon entropy | 0.14751 |
| G+C content | 0.50505 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -19.36 |
| Energy contribution | -19.99 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18013103 99 - 22422827 AGCUGACCAUCGAUGGUUCGCCUUUAACCCCGAAUUAAGCUCGAUUCACUGGGCACACCACACUGCCCACCUUUAAGGCCUCGAUUCGUGCAAAUAUUC .((.(((((....))))).))..........((((...((.(((.((..((((((........))))))((.....))....)).))).))....)))) ( -25.20, z-score = -2.27, R) >droYak2.chrX 16637184 99 - 21770863 AGCUGACCAUCGAUGGCCUGCCUUUAACCCCGAAUUAAGCUCGAUUGGCUUGGCACAUCACACAGCCUACCUUUUGCAGCUCAAUUCGGGCGAAAAUUC .((.(.(((....))).).))......(((((((((.(((((((..((...(((..........)))..))..))).)))).)))))))).)....... ( -29.60, z-score = -2.40, R) >droSec1.super_8 318322 99 - 3762037 AGCUGACCAUCGAUGGUUCGCCUUUAACCCCGAAUUAAGCUCGAUUCACUGGGCACACCACACUGCCCACCUUUAAGGCCUCGAUUCGUGCAAAUAUUC .((.(((((....))))).))..........((((...((.(((.((..((((((........))))))((.....))....)).))).))....)))) ( -25.20, z-score = -2.27, R) >droSim1.chrX_random 4627249 99 - 5698898 AGCUGACCAUCGAUGGUUCGCCUUUAACCCCGAAUUAAGCUCGAUUCACUGGGCACACCACACUGCCCACCUUUAAGGCCUCGAUUCGUGCAAAUAUUC .((.(((((....))))).))..........((((...((.(((.((..((((((........))))))((.....))....)).))).))....)))) ( -25.20, z-score = -2.27, R) >consensus AGCUGACCAUCGAUGGUUCGCCUUUAACCCCGAAUUAAGCUCGAUUCACUGGGCACACCACACUGCCCACCUUUAAGGCCUCGAUUCGUGCAAAUAUUC .((.(((((....))))).)).........(((((..((.((.......((((((........)))))).......)).))..)))))........... (-19.36 = -19.99 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:10 2011