Locus 1522

Sequence ID dm3.chr2L
Location 11,756,218 – 11,756,315
Length 97
Max. P 0.922787
window2079

overview

Window 9

Location 11,756,218 – 11,756,315
Length 97
Sequences 11
Columns 106
Reading direction reverse
Mean pairwise identity 71.90
Shannon entropy 0.58073
G+C content 0.45198
Mean single sequence MFE -20.27
Consensus MFE -14.22
Energy contribution -13.61
Covariance contribution -0.62
Combinations/Pair 1.43
Mean z-score -0.84
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.30
SVM RNA-class probability 0.922787
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11756218 97 - 23011544
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUCCA-----ACCCCAACCCCCCCUC
((((((((....)))))))).....((((.((((((((...........))))).----....(.((((.....)))).)....)-----)).))))......... ( -19.60, z-score =  -1.41, R)
>droEre2.scaffold_4929 12980665 96 + 26641161
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU----GCCUGCAGCCUUUUUGGCUUUGCCC------ACCACCACCCCCCAAC
((((((((....))))))))..((..(((((..(((((...........))))).----....((((((.....)))..))).)------))))..))........ ( -21.70, z-score =  -1.17, R)
>droYak2.chr2L 8176175 102 - 22324452
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU----GCCUGCAGCCUUUUUGGCUUUUCCCACCAUCUCCCCAACACCCCAUC
((((((((....)))))))).......(((((((((((...........))))).----......((((.....)))).................))))))..... ( -21.60, z-score =  -2.12, R)
>droAna3.scaffold_12916 9464176 84 + 16180835
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUUG-CAGCCUGCAGCCUUUUUGGCAAUGCCAU---------------------
((((((((....))))))))......(((((((..(((...((((..........)-)))...)))(((.....)))))))))).--------------------- ( -23.30, z-score =  -0.99, R)
>droSec1.super_3 7145724 97 - 7220098
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUUCA-----ACCCCAAGCCCCCAUC
..((((((....))))))(((((...(((((.((........)).)))))...((----(..((.((((.....)))).))..))-----)...)))))....... ( -20.80, z-score =  -1.04, R)
>droSim1.chr2L 11566213 97 - 22036055
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUUCA-----ACCCCAAGCCCCCAUC
..((((((....))))))(((((...(((((.((........)).)))))...((----(..((.((((.....)))).))..))-----)...)))))....... ( -20.80, z-score =  -1.04, R)
>dp4.chr4_group3 2628753 97 - 11692001
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUU----CCCUGCCGCCUUUUCGGCUUUGCAGC-----CACUCGAUCCACCACU
((((((((....))))))))......((((((((....)))).((..(((((...----....((((......))))..))))).-----.)).......)))).. ( -24.00, z-score =  -1.78, R)
>droPer1.super_1 4103603 97 - 10282868
GUGUGAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUU----CCCUGCCGCCUUUUCGGCUUUGCAGC-----CACUCGAUCCACCACU
((((((((....))))))))......((((((((....)))).((..(((((...----....((((......))))..))))).-----.)).......)))).. ( -24.10, z-score =  -1.44, R)
>droWil1.scaffold_180772 3672200 90 - 8906247
GUAUGUGUGUAAACUUACGUUUGUAGUGGUGUUAAUGUUAACUGUCAGUACUUUUGCCUAUCUCUGCCCGUCCAGCCCUCACUCUGUCUA----------------
....(.(((....((.(((...((((.(((((((....)))).....(((....)))..))).)))).)))..))....))).)......---------------- (  -8.50, z-score =   2.00, R)
>droVir3.scaffold_12963 6348776 82 - 20206255
GUGUAAGCAUCUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUUG--GCCGUGUGUGCUCGCAUCGGGUCCUG----------------------
((((((((....)))))))).((((.((..((((....))))...)).))))...(--((((((((....)))))..))))...---------------------- ( -20.70, z-score =  -0.45, R)
>droMoj3.scaffold_6500 25488890 82 - 32352404
GUGUAAGCAUCUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUUG--GCCGUGUACGCGUAUCGAGUGUCCUG----------------------
((((((((....)))))))).......((((.((........)).))))(((((((--(.(((....)))..))))))))....---------------------- ( -17.90, z-score =   0.20, R)
>consensus
GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU____GCCUGCAGCCUUUUUGGCUUUGCUCA______CC_C_A_CCCCCA_C
((((((((....)))))))).((((.((..((((....))))...)).))))..............(((.....)))............................. (-14.22 = -13.61 +  -0.62) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:34 2011