Sequence ID | dm3.chr2L |
---|---|
Location | 11,756,218 – 11,756,315 |
Length | 97 |
Max. P | 0.922787 |
Location | 11,756,218 – 11,756,315 |
---|---|
Length | 97 |
Sequences | 11 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 71.90 |
Shannon entropy | 0.58073 |
G+C content | 0.45198 |
Mean single sequence MFE | -20.27 |
Consensus MFE | -14.22 |
Energy contribution | -13.61 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.43 |
Mean z-score | -0.84 |
Structure conservation index | 0.70 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.922787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11756218 97 - 23011544 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUCCA-----ACCCCAACCCCCCCUC ((((((((....)))))))).....((((.((((((((...........))))).----....(.((((.....)))).)....)-----)).))))......... ( -19.60, z-score = -1.41, R) >droEre2.scaffold_4929 12980665 96 + 26641161 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU----GCCUGCAGCCUUUUUGGCUUUGCCC------ACCACCACCCCCCAAC ((((((((....))))))))..((..(((((..(((((...........))))).----....((((((.....)))..))).)------))))..))........ ( -21.70, z-score = -1.17, R) >droYak2.chr2L 8176175 102 - 22324452 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU----GCCUGCAGCCUUUUUGGCUUUUCCCACCAUCUCCCCAACACCCCAUC ((((((((....)))))))).......(((((((((((...........))))).----......((((.....)))).................))))))..... ( -21.60, z-score = -2.12, R) >droAna3.scaffold_12916 9464176 84 + 16180835 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUUG-CAGCCUGCAGCCUUUUUGGCAAUGCCAU--------------------- ((((((((....))))))))......(((((((..(((...((((..........)-)))...)))(((.....)))))))))).--------------------- ( -23.30, z-score = -0.99, R) >droSec1.super_3 7145724 97 - 7220098 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUUCA-----ACCCCAAGCCCCCAUC ..((((((....))))))(((((...(((((.((........)).)))))...((----(..((.((((.....)))).))..))-----)...)))))....... ( -20.80, z-score = -1.04, R) >droSim1.chr2L 11566213 97 - 22036055 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACGUUU----GCCUGCAGCCUUUUUGGCUUCGUUCA-----ACCCCAAGCCCCCAUC ..((((((....))))))(((((...(((((.((........)).)))))...((----(..((.((((.....)))).))..))-----)...)))))....... ( -20.80, z-score = -1.04, R) >dp4.chr4_group3 2628753 97 - 11692001 GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUU----CCCUGCCGCCUUUUCGGCUUUGCAGC-----CACUCGAUCCACCACU ((((((((....))))))))......((((((((....)))).((..(((((...----....((((......))))..))))).-----.)).......)))).. ( -24.00, z-score = -1.78, R) >droPer1.super_1 4103603 97 - 10282868 GUGUGAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUU----CCCUGCCGCCUUUUCGGCUUUGCAGC-----CACUCGAUCCACCACU ((((((((....))))))))......((((((((....)))).((..(((((...----....((((......))))..))))).-----.)).......)))).. ( -24.10, z-score = -1.44, R) >droWil1.scaffold_180772 3672200 90 - 8906247 GUAUGUGUGUAAACUUACGUUUGUAGUGGUGUUAAUGUUAACUGUCAGUACUUUUGCCUAUCUCUGCCCGUCCAGCCCUCACUCUGUCUA---------------- ....(.(((....((.(((...((((.(((((((....)))).....(((....)))..))).)))).)))..))....))).)......---------------- ( -8.50, z-score = 2.00, R) >droVir3.scaffold_12963 6348776 82 - 20206255 GUGUAAGCAUCUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUGCAUUUG--GCCGUGUGUGCUCGCAUCGGGUCCUG---------------------- ((((((((....)))))))).((((.((..((((....))))...)).))))...(--((((((((....)))))..))))...---------------------- ( -20.70, z-score = -0.45, R) >droMoj3.scaffold_6500 25488890 82 - 32352404 GUGUAAGCAUCUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUUG--GCCGUGUACGCGUAUCGAGUGUCCUG---------------------- ((((((((....)))))))).......((((.((........)).))))(((((((--(.(((....)))..))))))))....---------------------- ( -17.90, z-score = 0.20, R) >consensus GUGUAAGCAUAUGUUUACGCUUGUAUUGGUGUUAAUGUUAACUGUCACUACAUUU____GCCUGCAGCCUUUUUGGCUUUGCUCA______CC_C_A_CCCCCA_C ((((((((....)))))))).((((.((..((((....))))...)).))))..............(((.....)))............................. (-14.22 = -13.61 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:34 2011