Locus 15216

Sequence ID dm3.chrX
Location 17,978,820 – 17,978,925
Length 105
Max. P 0.769482
window20959

overview

Window 9

Location 17,978,820 – 17,978,925
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 90.36
Shannon entropy 0.15485
G+C content 0.45238
Mean single sequence MFE -26.33
Consensus MFE -20.85
Energy contribution -21.35
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.63
SVM RNA-class probability 0.769482
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17978820 105 - 22422827
GGUUUAGUUGGGUUCAGUCG-UGCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCCUUCGAUUUGACUACACUUUCCCAACUGGGCAUUUUCGCUA
.(((((((((((...(((((-(((........))))........((((........))))..............)))).......))))))))))).......... ( -28.60, z-score =  -2.56, R)
>droYak2.chrX 16604421 105 - 21770863
AGUUUAGUUGGGUUCAGUCGACAUAGCCAUAUGCAC-AAUAUCCCAGCCUCAAAACGCUGUCUUCAUUCGUUUUCACUACACUUUCCCAAGUGGGCAUUAUCACUG
.(((((.(((((...(((.(.((((....)))))..-.......((((........))))....................)))..))))).))))).......... ( -19.10, z-score =  -0.81, R)
>droSec1.super_8 285620 105 - 3762037
GGUUUAGUUGGGUUCAGUCG-UGCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGCCUACACUUUCCCAACUGGGCAUUUUCGCUA
.(((((((((((...(((.(-(((........))))........((((........))))....................)))..))))))))))).......... ( -26.60, z-score =  -1.89, R)
>droSim1.chrX_random 4615082 105 - 5698898
GGUUUAGUUGGGUUCAGUCG-UGCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGCCUAGACUUUCCCAACUGGGCAUUUUCGCUA
.(((((((((((...(((((-(((........))))........((((........))))...................))))..))))))))))).......... ( -31.00, z-score =  -2.99, R)
>consensus
GGUUUAGUUGGGUUCAGUCG_UGCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGACUACACUUUCCCAACUGGGCAUUUUCGCUA
.(((((((((((....(((......)))................((((........)))).........................))))))))))).......... (-20.85 = -21.35 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:06 2011