| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,947,010 – 17,947,061 |
| Length | 51 |
| Max. P | 0.597926 |
| Location | 17,947,010 – 17,947,061 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 84.31 |
| Shannon entropy | 0.25582 |
| G+C content | 0.40196 |
| Mean single sequence MFE | -11.47 |
| Consensus MFE | -6.97 |
| Energy contribution | -7.72 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17947010 51 - 22422827 GCCUUUUCAGUGAUAUGUGAAAAGAGCAGUCCAUGUGGCGCUUCGAAAACC (((((((((........))))))).))(((((....)).)))......... ( -10.20, z-score = -0.61, R) >droEre2.scaffold_4690 8274874 51 - 18748788 ACCUUUUCAUUGAUAUAUGAAAAGAGCAGUUCAAGCGAACCAUCGCAAAAC ..((((((((......))))))))..........((((....))))..... ( -12.00, z-score = -3.74, R) >droSec1.super_8 253894 51 - 3762037 GCCUUUUCAUUGAUAUAAGAAAAGAGCAGUUCAAGUAGAGCGUCGAAAACU ((((((((..........)))))).)).((((.....)))).......... ( -10.10, z-score = -1.70, R) >droSim1.chrX 13982555 51 - 17042790 GCCUUUUCAUUGAUAUAUGAAAAGAGCAGUUCAAGUGGAGCGUCGAAAACU ((((((((((......)))))))).)).((((.....)))).......... ( -13.60, z-score = -2.53, R) >consensus GCCUUUUCAUUGAUAUAUGAAAAGAGCAGUUCAAGUGGAGCGUCGAAAACC ((((((((((......)))))))).))........................ ( -6.97 = -7.72 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:05 2011