| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,937,578 – 17,937,675 |
| Length | 97 |
| Max. P | 0.670100 |
| Location | 17,937,578 – 17,937,675 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.93 |
| Shannon entropy | 0.22847 |
| G+C content | 0.53059 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -20.14 |
| Energy contribution | -20.02 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17937578 97 + 22422827 AACUCCCCAAAGUCGCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCG---------------------GAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAA .........(((.(((((......))))).)))........((((((..((((....))---------------------)).((((.....))))......))))))....--...... ( -28.50, z-score = -2.44, R) >droSim1.chrX 13973087 97 + 17042790 AACUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCG---------------------GAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAA .................((((....((((......))))..((((((..((((....))---------------------)).((((.....))))......))))))..))--)).... ( -27.10, z-score = -2.29, R) >droEre2.scaffold_4690 8265778 103 + 18748788 AACUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCGA---------------AUCCGGAAUCCGGAAUAUGCAAUUCCCAUAGCCAUCU--ACUCAG .................(((((...((((......))))...((.(((.((((..((((.---------------...))))...)))).)))))..........)))))..--...... ( -25.40, z-score = -2.17, R) >droYak2.chrX 16558103 120 + 21770863 UGCUCCCCAAGGUCUCCGUGGCAUCGGUGUCUUCUCACCUCGGCUGUAAUCCGAAUCCGCUAUCCGGAAUCCAGAGUCCAGAGUCCGGAAUAUGGAAUUCCCAUGGCCAUCUCAACUCAA ..........((..((((((((...((((......))))((((.......))))....))))..))))..)).((((...(((...((..(((((.....))))).))..))).)))).. ( -33.50, z-score = -0.65, R) >droSec1.super_8 244105 97 + 3762037 AACUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCG---------------------GAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAA .................((((....((((......))))..((((((..((((....))---------------------)).((((.....))))......))))))..))--)).... ( -27.10, z-score = -2.29, R) >consensus AACUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCG_____________________GAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU__ACUCAA ..........(((....(((((.((((((......))))((((.......)))).................................)).(((((.....))))))))))....)))... (-20.14 = -20.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:04 2011