| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,937,277 – 17,937,343 |
| Length | 66 |
| Max. P | 0.523261 |
| Location | 17,937,277 – 17,937,343 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 57.40 |
| Shannon entropy | 0.67982 |
| G+C content | 0.30951 |
| Mean single sequence MFE | -10.05 |
| Consensus MFE | -4.18 |
| Energy contribution | -4.14 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.86 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17937277 66 + 22422827 --------UCGAUAUAAAC-GGAUUGUUUGACAUUCAUGUCAACU-----UUGCGAAACAAAUAAA--UAUAAAAUAUUUCA --------..........(-(.(..(((.((((....))))))).-----.).))...........--.............. ( -7.70, z-score = -0.34, R) >droSec1.super_8 243806 66 + 3762037 --------UCGUUAUAAAC-GGAUUGUUUGACAUUCAUGUCAACU-----CUGCGAAACGCAUAAA--UAUAAAAUAUUUCA --------...........-(((.(((((((((....))))....-----.((((...))))....--....))))).))). ( -9.20, z-score = -0.67, R) >droEre2.scaffold_4690 8265552 65 + 18748788 --------UGCAUAUUAAC-GGAUAAGUUGACUUUCAUGUCAACU-----CUGCGAAACGAAUAAA--UGCGAAAUAUUUU- --------.((((.....(-(....(((((((......)))))))-----........)).....)--)))..........- ( -11.70, z-score = -1.53, R) >droAna3.scaffold_13335 1647054 81 - 3335858 AGGAUACACAAGGAUACACAGGAGAAGCUGCCACUUCUGGCAAUUAACUCUUGGGAAAUCAAUAAAAUUGUUAAAUAUUUU- ............(((...((((((....(((((....))))).....))))))....))).....................- ( -14.10, z-score = -1.13, R) >triCas2.ChLG7 16904046 66 + 17478683 --------CGAACAAGGAU-GAAGUUUUUGCUACUUUGACCAGAC-----UUAAUAAACAAAUGAA--UAAAAACAACGUCA --------........(((-(..(((((((....((((.......-----........))))....--)))))))..)))). ( -7.56, z-score = -0.63, R) >consensus ________UCAAUAUAAAC_GGAUUAUUUGACAUUCAUGUCAACU_____UUGCGAAACAAAUAAA__UAUAAAAUAUUUCA .........................(((((((......)))))))..................................... ( -4.18 = -4.14 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:03 2011