| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,935,260 – 17,935,340 |
| Length | 80 |
| Max. P | 0.786464 |
| Location | 17,935,260 – 17,935,340 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 89.94 |
| Shannon entropy | 0.17209 |
| G+C content | 0.30507 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -11.54 |
| Energy contribution | -12.34 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17935260 80 - 22422827 CUGUCACAUACUAUAUAAUUUUAUUUGUUAUUUUUGGCAGUUAAAAUAAUAAAUCCAUUUAGUGAGUAUCUCACAGCGGG ((((.(.(((((...(((....((((((((((((........))))))))))))....)))...))))).).)))).... ( -14.60, z-score = -2.07, R) >droEre2.scaffold_4690 8263702 73 - 18748788 CUGUCACAC-------AGCUUUACUUGUUAUAUUUGUCAGUUACAACAAUAAAUCCAUUUAGUGAGUAUCUCACAGCGGU .........-------.(((....(((((.((.........)).)))))............(((((...))))))))... ( -8.30, z-score = 0.70, R) >droYak2.chrX 16555740 75 - 21770863 CUGUCACAUAC-----AAUUUUAUUUGUUAUUUUUGUCAGUUAAAAUAAUAAAUCCAUUCAGUGAGUAUCUCACAGCGGG ((((.......-----......((((((((((((........)))))))))))).......(((((...))))).)))). ( -13.90, z-score = -2.64, R) >droSec1.super_8 241835 80 - 3762037 CUGUCACAUACUAUAUAAUUUUAUUUGUUAUUUUUGGCAGUUAAAAUAAUAAAUCCAUUUAGUGAGUAUCUCACAGCGGG ((((.(.(((((...(((....((((((((((((........))))))))))))....)))...))))).).)))).... ( -14.60, z-score = -2.07, R) >droSim1.chrX 13971280 80 - 17042790 CUGUCACAUACUAUAUAAUUUUAUUUGUUAUUUUUGGCAGUUAAAAUAAUAAAUCCAUUUAGUGAGUAUCUCACAGCGGG ((((.(.(((((...(((....((((((((((((........))))))))))))....)))...))))).).)))).... ( -14.60, z-score = -2.07, R) >consensus CUGUCACAUACUAUAUAAUUUUAUUUGUUAUUUUUGGCAGUUAAAAUAAUAAAUCCAUUUAGUGAGUAUCUCACAGCGGG ((((..................((((((((((((........)))))))))))).......(((((...))))).)))). (-11.54 = -12.34 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:02 2011