| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,750,449 – 11,750,547 |
| Length | 98 |
| Max. P | 0.926918 |
| Location | 11,750,449 – 11,750,547 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.66 |
| Shannon entropy | 0.39767 |
| G+C content | 0.49935 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -19.45 |
| Energy contribution | -21.23 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.926918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11750449 98 + 23011544 GUCAUCCUUUUAAUUAUGUAACACGCGCCACCACAGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGUCCUUUUUGGUGGCAAACAUUUUCC------- ..........................(((((((.((((((((......)))).((.(((.(....).))).))))))...)))))))...........------- ( -26.90, z-score = -1.96, R) >droAna3.scaffold_12916 9458024 77 - 16180835 GGCAGCCUUUUAAUUAUGUAACACGCUCCUCAGCCAUUGCUGUGCUU---GCCCCCCGGACCUUGGUG-GCAUUUCCUUGC------------------------ .((((...................((....((((....)))).)).(---(((.((........)).)-))).....))))------------------------ ( -14.50, z-score = 1.61, R) >droEre2.scaffold_4929 12974749 105 - 26641161 GCCAUCUUUUUAAUUAUGUAACACGCGCCACCACUGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGCUCUUUUUGGUGGCAAACAUUUUCCAUUUUCC ((((((...........(((((((...(((....))).)))))))....((((..(((.....)))..)))).........)))))).................. ( -29.00, z-score = -2.59, R) >droYak2.chr2L 8170009 97 + 22324452 GCCAUCUUUUUAAUUAUGUAACACGCGCCGCCACUGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGUUCUUUUUGGUGGCAAACAUAUCC-------- ((((((...........(.(((.(((((((..((((((((((........))))))))))...))))..))))))).....))))))..........-------- ( -29.59, z-score = -2.50, R) >droSec1.super_3 7140106 98 + 7220098 GCCAUCCUUUUAAUUAUGUAACACGCGCCACCACAGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGUCCUUUUUGGUGGCAAAAAUUUUCC------- ((((((...........(((((((...((......)).)))))))....((((..(((.....)))..)))).........))))))...........------- ( -28.00, z-score = -2.06, R) >droSim1.chr2L 11560571 98 + 22036055 GCCAUCCUUUUAAUUAUGUAACACGCGCCACCACAGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGUCCUUUUUGGUGGCAAACAUUUUCC------- ((((((...........(((((((...((......)).)))))))....((((..(((.....)))..)))).........))))))...........------- ( -28.00, z-score = -2.05, R) >consensus GCCAUCCUUUUAAUUAUGUAACACGCGCCACCACAGGAGUGUUGCCUUACGCACUUCGGUCUUCGGUCUGCGGUCCUUUUUGGUGGCAAACAUUUUCC_______ ((((((...........(((((((...((......)).)))))))....((((..(((.....)))..)))).........)))))).................. (-19.45 = -21.23 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:33 2011