| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,928,726 – 17,928,791 |
| Length | 65 |
| Max. P | 0.553111 |
| Location | 17,928,726 – 17,928,791 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 86.93 |
| Shannon entropy | 0.17818 |
| G+C content | 0.41110 |
| Mean single sequence MFE | -15.90 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.47 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17928726 65 + 22422827 ACAAAUAAUUAAUGCGUUAAUGGGCUGGGAAAAAGGAAAUUCAGACAGUCUUGGGCU--GGGUUAAG ........(((((.((((...((((((.(((........)))...))))))..))).--).))))). ( -13.60, z-score = -2.02, R) >droYak2.chrX 16549199 65 + 21770863 ACAAAUAAUUAAUGGGUUAAUGGGCUGGGAAAAAAGAAAUUCCGGCAGUCUUGGGCU--GGGUUAAG ........(((((.((((...((((((((((........))))..))))))..))))--.).)))). ( -13.70, z-score = -1.33, R) >droSec1.super_8 229023 67 + 3762037 ACAAAUAAUUAAUGGGUUAAUGGGCUGGGAAAACGGAAAUUCAGACAGUCCCAACCCAAGGGUUAAG .....(((((..((((((...((((((.(((........)))...)))))).))))))..))))).. ( -20.40, z-score = -2.80, R) >consensus ACAAAUAAUUAAUGGGUUAAUGGGCUGGGAAAAAGGAAAUUCAGACAGUCUUGGGCU__GGGUUAAG .....(((((....((((...((((((.(((........)))...))))))..))))...))))).. (-11.35 = -11.47 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:55:00 2011