Locus 15208

Sequence ID dm3.chrX
Location 17,928,379 – 17,928,472
Length 93
Max. P 0.996577
window20951

overview

Window 1

Location 17,928,379 – 17,928,472
Length 93
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 82.07
Shannon entropy 0.24694
G+C content 0.36433
Mean single sequence MFE -23.27
Consensus MFE -20.72
Energy contribution -21.17
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.97
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.95
SVM RNA-class probability 0.996577
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17928379 93 + 22422827
GGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAGGCUUAAGUCCGGGAAACUUGACGUAACAAAU--------------------------AAAAGUCUCAGCUCUACUAU
.((((((((...(((((((...)))))))..)))))))).(((((...(((.((....)).)))(..((....--------------------------....))..)))).))..... ( -23.80, z-score =  -2.98, R)
>droSim1.chrX 13955908 119 + 17042790
GGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAGCUCCACUAU
.((((((((...(((((((...)))))))..))))))))..((((((((((..(....)..))))))......((((........))))...................))))....... ( -23.00, z-score =  -2.97, R)
>droSec1.super_8 228702 119 + 3762037
GGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAGCUCCACUAU
.((((((((...(((((((...)))))))..))))))))..((((((((((..(....)..))))))......((((........))))...................))))....... ( -23.00, z-score =  -2.97, R)
>consensus
GGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAGCUCCACUAU
.((((((((...(((((((...)))))))..))))))))..((((((((((..(....)..))))))......((((........))))...................))))....... (-20.72 = -21.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:59 2011