Locus 15207

Sequence ID dm3.chrX
Location 17,926,800 – 17,926,944
Length 144
Max. P 0.665305
window20950

overview

Window 0

Location 17,926,800 – 17,926,944
Length 144
Sequences 3
Columns 144
Reading direction reverse
Mean pairwise identity 84.84
Shannon entropy 0.19769
G+C content 0.43365
Mean single sequence MFE -34.60
Consensus MFE -28.07
Energy contribution -29.07
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.37
SVM RNA-class probability 0.665305
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17926800 144 - 22422827
UAUGUCAAAUACGGACUCGAAUCCCAACUCAAGCAUUCCCAUUAACCCCAUUGUCCAUGUGCAAUUCCGGUUGGGAUGGUAACCAUCUGGUUAAGUUGUGUGUGUGUGUAUGUGUGGGACAAAGAUUUUCCUUGUAUUGUAUUU
..((((..(((((.((.((.(..((((((....(((.((((...(((..(((((......)))))...)))))))))).(((((....)))))))))).)..).)).)).)))))..))))....................... ( -32.30, z-score =   0.91, R)
>droSim1.chrX 13954352 121 - 17042790
UAUGUCAAAUAUGGACUCGAAUCCCAACUCAAGCAUCCCCAUUAACCCCAUUGUCCAUAUGCAAUUCCGGUUGUGAUGGUAACCAUCUGCUUGAGUUGUG----------UGUGUGGCACAAAGAUUUUCC-------------
..(((((.(((((((......)))(((((((((((.......(((((..(((((......)))))...))))).(((((...)))))))))))))))).)----------))).)))))............------------- ( -34.70, z-score =  -2.80, R)
>droSec1.super_8 227148 121 - 3762037
UAUGUCAGAUAUGGACUCGAAUCCCAACUCAAGCAUCCCCAUUAACCCCAUUGUCCAUAUGCAAUUCCGGUUGUGAUGGUAACCAUCUGCUUGAGUUGUG----------UGUGUGGCACAAAGAUUUUCC-------------
..(((((.(((((((......)))(((((((((((.......(((((..(((((......)))))...))))).(((((...)))))))))))))))).)----------))).)))))............------------- ( -36.80, z-score =  -3.09, R)
>consensus
UAUGUCAAAUAUGGACUCGAAUCCCAACUCAAGCAUCCCCAUUAACCCCAUUGUCCAUAUGCAAUUCCGGUUGUGAUGGUAACCAUCUGCUUGAGUUGUG__________UGUGUGGCACAAAGAUUUUCC_____________
..(((((.(((.(((......)))(((((((((((.......(((((..(((((......)))))...))))).(((((...))))))))))))))))............))).)))))......................... (-28.07 = -29.07 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:58 2011