| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,924,406 – 17,924,496 |
| Length | 90 |
| Max. P | 0.782668 |
| Location | 17,924,406 – 17,924,496 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Shannon entropy | 0.43247 |
| G+C content | 0.52977 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -13.67 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17924406 90 + 22422827 UUUGGCCAAAUGCCAGCGGAAUC-GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCCCCCC----------GUCCAGUUGCCACCUUCUCCGCCGAAAAU ..((((.....))))(((((...-((..(((((((......)))))))..)).(((......----------)))..............)))))....... ( -24.30, z-score = -2.21, R) >droSim1.chrX 13951995 89 + 17042790 UUUGGCCAAAUGCCAGCGGAAUC-GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCCCCC-----------GUCCAGUCGCCACCUUCUCCGCCGAAAAU ..((((.....))))(((((...-((..(((((((......)))))))..)).(((.....-----------.....))).........)))))....... ( -24.20, z-score = -2.16, R) >droSec1.super_8 224801 89 + 3762037 UUUGGCCAAAUGCCAGCGGAAUC-GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCCCCC-----------GUCCAGUCGCCACCUUCUCCGCCGAAAAU ..((((.....))))(((((...-((..(((((((......)))))))..)).(((.....-----------.....))).........)))))....... ( -24.20, z-score = -2.16, R) >droYak2.chrX 16544830 100 + 21770863 UUUGGCCAAGUGCCAGCGGAAUC-GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCCCCUCCCCUUCCGCAGUCCAGUUGCCACCUUCUCCAUCGAAAAU ..((((.((.((...((((((((-....(((((((......))))))).....))..........))))))....)).))))))................. ( -24.70, z-score = -1.81, R) >droEre2.scaffold_4690 8253393 96 + 18748788 UUUGGCCAAAUGCCAGCCGAAUC-GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCACCCCAUUCCC----GUCCAGGCGCCACCUUCUUCGACGAAAAU ..((((.....))))(((.....-((..(((((((......)))))))..)).(((............----)))..)))..................... ( -20.60, z-score = -0.69, R) >droVir3.scaffold_12928 4968759 95 - 7717345 UCUGGCCAAAUGCCAAGGAAAACAGCUUGACUGGUUUUG---CCAAUUUGACCCCCCCCCCCCCUCCUC---AACCUCUGCACAUGCAGUCCAUUAAAUUG ..((((.....)))).(((............(((.....---)))........................---.....((((....)))))))......... ( -14.80, z-score = 0.21, R) >consensus UUUGGCCAAAUGCCAGCGGAAUC_GUUUGACUGGGCUAAUCCCCAGUUUUAUAGACCCCCCC__________GUCCAGUCGCCACCUUCUCCGCCGAAAAU ..((((.....))))(((((.......(((((((((....................................)))))))))........)))))....... (-13.67 = -14.23 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:57 2011