| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,912,603 – 17,912,690 |
| Length | 87 |
| Max. P | 0.762097 |
| Location | 17,912,603 – 17,912,690 |
|---|---|
| Length | 87 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 85.06 |
| Shannon entropy | 0.26713 |
| G+C content | 0.38720 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -18.16 |
| Energy contribution | -18.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17912603 87 + 22422827 AGUUUGUUUCGAAUUUGAAUCGGUUGUUAUCGGGUAUAAUGACCGUUACACACAUGGUUAUAAACUCGAAUCGGUUGCUUAAAAUUU .................(((((((.....((((((...((((((((.......))))))))..)))))))))))))........... ( -17.50, z-score = -0.56, R) >droSim1.chrX 13939154 87 + 17042790 AGUAGAAUUCAAAUUUGAAUCGGUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAAAAACUCGAAUCGGUUGCUCAAAAUUU .............(((((((((((.....((((((.(..(((((((.......))))))).).))))))))))))...))))).... ( -19.30, z-score = -1.14, R) >droSec1.super_8 213196 87 + 3762037 AGUAGAAUUCAAAUUUGAAUCGGUUGUUAUCGGGUAUGCUGACCGUUAAACAAACGGUUAAAAACUCGAAUCGGUUGCUAGAAAUUU (((((.(((((....)))))((((.....((((((.(..((((((((.....)))))))).).)))))))))).)))))........ ( -20.10, z-score = -1.67, R) >droYak2.chrX 16533183 86 + 21770863 AGUAGGAUUCAAAUUCGAAUCGGUCGUUAUCGGGUAUGGUGACCGUUACGCUUACGGUUAUGAACCCGAAUCGGUUG-CUAAAUUUU ((((((((((......)))))..(((...((((((.(.((((((((.......)))))))).)))))))..))))))-))....... ( -28.60, z-score = -2.62, R) >droEre2.scaffold_4690 8242017 87 + 18748788 GGUAGGAUUCAAAUUUGAAUCGGUCGUUAUCGGGUAUGUUGACCGUUACACUUACGGUGAUGAACUCGAAUCGGUUGACCAGAUUUU .....((((((....))))))(((((...((((((.((((.(((((.......))))))))).))))))......)))))....... ( -25.50, z-score = -1.49, R) >consensus AGUAGGAUUCAAAUUUGAAUCGGUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAUAAACUCGAAUCGGUUGCUCAAAAUUU .................(((((((.....((((((....(((((((.......)))))))...)))))))))))))........... (-18.16 = -18.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:52 2011