Locus 15202

Sequence ID dm3.chrX
Location 17,906,487 – 17,906,591
Length 104
Max. P 0.995379
window20938 window20939

overview

Window 8

Location 17,906,487 – 17,906,591
Length 104
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 59.12
Shannon entropy 0.75195
G+C content 0.45569
Mean single sequence MFE -25.40
Consensus MFE -12.66
Energy contribution -14.08
Covariance contribution 1.42
Combinations/Pair 1.32
Mean z-score -1.59
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.80
SVM RNA-class probability 0.995379
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17906487 104 + 22422827
GGUUCGGUGGUUCCAGCUCGACUUGGUGGUCCACAAAGACACCAACGAUCGUAGCUGUCUACCUUUUCCUCAAACAUUAUCAUU--UUUCAAAAAUUUUUUGUGAU---------
((...(((((...(((((((((((((((.((......)))))))).).))).))))).)))))....)).........(((((.--...............)))))--------- ( -26.39, z-score =  -2.13, R)
>droSim1.chrX 13932183 88 + 17042790
GGUUCAGUAGUUCCAGCUCGACUUGGUGGUCCACAAAGACACCAACGAUCGUAGCUGGCUACCUUUUCCUCAAUCAAUCUCAUU--UGAU-------------------------
((....((((..((((((((((((((((.((......)))))))).).))).)))))))))).....))...(((((......)--))))------------------------- ( -27.20, z-score =  -3.54, R)
>droSec1.super_8 207118 88 + 3762037
GGUUCAGUAGUUUCAGCUCGACUUGGUGGUCCACAAAGACACCAACGAUCGUAGCUGGCUACCUUUUUCUCAAUGAAUCUCAUU--UGAU-------------------------
(((((((((((..(((((((((((((((.((......)))))))).).))).))))))))))...........)))))).....--....------------------------- ( -25.60, z-score =  -2.56, R)
>droYak2.chrX 16526785 102 + 21770863
GGCUCGGUGGUUUCAGCUCGACUUGGUGGUUCACAA---------CGAUCGCAGCUGGCUACUUUUUCCUCAUCCAUACCCAUUGCUUAUCUCAACUUAUACUGUUUUGUU----
((...((((((..((((((((.(((.((.....)).---------)))))).)))))))))))....))..........................................---- ( -18.60, z-score =   0.27, R)
>droEre2.scaffold_4690 8234284 115 + 18748788
GGCAUGGUGGUUCCAGCUCGACUUGGUGGCUCACAAAGACACCAACGAUCGUAGCUGGCUACUUUUACCUCACCCAUUCUCGCGGCACUUUAAAAUUGUCACGAUUUUUAGAGAU
((...((((((.((((((((((((((((.((.....)).)))))).).))).))))))..)))...)))....))....(((.((((.........)))).)))........... ( -31.80, z-score =  -1.74, R)
>droAna3.scaffold_13335 1614212 91 - 3335858
-------UGGUCUCUCUAUGGUAUGGUGGUUCCAAAAGCCUCCAACGAUCGGCAAUUGACACAUUUCUCUGGCUCUUUUCGAAGGGGUAGUGGGAAUU-----------------
-------..(((......((((.(((.((((.....)))).)))...))))......)))..(((((((((.(((((....))))).))).)))))).----------------- ( -22.80, z-score =   0.15, R)
>consensus
GGUUCGGUGGUUCCAGCUCGACUUGGUGGUCCACAAAGACACCAACGAUCGUAGCUGGCUACCUUUUCCUCAAUCAUUCUCAUU__UUAU___AA_UU_________________
......((((..(((((((((.((((((...........))))))...))).))))))))))..................................................... (-12.66 = -14.08 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 17,906,487 – 17,906,591
Length 104
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 59.12
Shannon entropy 0.75195
G+C content 0.45569
Mean single sequence MFE -23.94
Consensus MFE -10.62
Energy contribution -11.65
Covariance contribution 1.03
Combinations/Pair 1.27
Mean z-score -1.08
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.27
SVM RNA-class probability 0.918840
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17906487 104 - 22422827
---------AUCACAAAAAAUUUUUGAAA--AAUGAUAAUGUUUGAGGAAAAGGUAGACAGCUACGAUCGUUGGUGUCUUUGUGGACCACCAAGUCGAGCUGGAACCACCGAACC
---------.((........(((((.(((--.((....)).))).)))))..(((...(((((.((((..(((((((((....))).)))))))))))))))..)))...))... ( -26.60, z-score =  -1.57, R)
>droSim1.chrX 13932183 88 - 17042790
-------------------------AUCA--AAUGAGAUUGAUUGAGGAAAAGGUAGCCAGCUACGAUCGUUGGUGUCUUUGUGGACCACCAAGUCGAGCUGGAACUACUGAACC
-------------------------((((--(......)))))...((....(((((((((((.((((..(((((((((....))).))))))))))))))))..)))))...)) ( -29.80, z-score =  -3.26, R)
>droSec1.super_8 207118 88 - 3762037
-------------------------AUCA--AAUGAGAUUCAUUGAGAAAAAGGUAGCCAGCUACGAUCGUUGGUGUCUUUGUGGACCACCAAGUCGAGCUGAAACUACUGAACC
-------------------------.(((--(.((.....))))))......(((((.(((((.((((..(((((((((....))).)))))))))))))))...)))))..... ( -26.80, z-score =  -2.86, R)
>droYak2.chrX 16526785 102 - 21770863
----AACAAAACAGUAUAAGUUGAGAUAAGCAAUGGGUAUGGAUGAGGAAAAAGUAGCCAGCUGCGAUCG---------UUGUGAACCACCAAGUCGAGCUGAAACCACCGAGCC
----...............(((......)))....(((.(((.((.((.........))((((.((((.(---------(.(....).))...)))))))).....))))).))) ( -15.60, z-score =   1.24, R)
>droEre2.scaffold_4690 8234284 115 - 18748788
AUCUCUAAAAAUCGUGACAAUUUUAAAGUGCCGCGAGAAUGGGUGAGGUAAAAGUAGCCAGCUACGAUCGUUGGUGUCUUUGUGAGCCACCAAGUCGAGCUGGAACCACCAUGCC
.((.((.....(((((.((.........)).))))).....)).))((((.......((((((.((((..((((((.(((...))).))))))))))))))))........)))) ( -33.36, z-score =  -1.62, R)
>droAna3.scaffold_13335 1614212 91 + 3335858
-----------------AAUUCCCACUACCCCUUCGAAAAGAGCCAGAGAAAUGUGUCAAUUGCCGAUCGUUGGAGGCUUUUGGAACCACCAUACCAUAGAGAGACCA-------
-----------------...((.(.(((..........(((((((.....((((.(((.......)))))))...)))))))((.....))......))).).))...------- ( -11.50, z-score =   1.60, R)
>consensus
_________________AA_UU___AUAA__AAUGAGAAUGAUUGAGGAAAAGGUAGCCAGCUACGAUCGUUGGUGUCUUUGUGAACCACCAAGUCGAGCUGAAACCACCGAACC
..........................................................(((((.((((..((((((...........)))))))))))))))............. (-10.62 = -11.65 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:50 2011