| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,896,985 – 17,897,041 |
| Length | 56 |
| Max. P | 0.975594 |
| Location | 17,896,985 – 17,897,041 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 86.01 |
| Shannon entropy | 0.22405 |
| G+C content | 0.33036 |
| Mean single sequence MFE | -12.43 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17896985 56 + 22422827 GCUUAAUUGAAGGAAACUUUCAAGAGUUUCUAACACGGGGGAAACUUUUAAAUUUU ........((((....)))).((((((((((........))))))))))....... ( -12.80, z-score = -2.76, R) >droSim1.chrX 13920180 56 + 17042790 GCUUAAUUGAAGGAAACUUUCAAGAGUUUCUAACUCGGCAGAAACUUUUAAAUUAU ...(((((((((....)))).((((((((((........)))))))))).))))). ( -12.90, z-score = -2.78, R) >droYak2.chrX 16516302 56 + 21770863 GCCUAAUUAAGGGAAACUUUCAAGAGUUUCUAGCUCGUGAGAAACUUUUCAAUUAU ...(((((((((....)))).((((((((((........)))))))))).))))). ( -11.80, z-score = -1.49, R) >droEre2.scaffold_4690 8224688 56 + 18748788 GCUUAAUUAGAGGCAACUUUCAAGAGUUUCUAACUCGUGAGCAACUUGUAAGUUAU (((((...((((....))))...((((.....)))).)))))((((....)))).. ( -12.20, z-score = -1.28, R) >consensus GCUUAAUUAAAGGAAACUUUCAAGAGUUUCUAACUCGGGAGAAACUUUUAAAUUAU ........((((....)))).((((((((((........))))))))))....... (-11.31 = -11.00 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:47 2011