Locus 152

Sequence ID dm3.chr2L
Location 1,047,047 – 1,047,105
Length 58
Max. P 0.967634
window216

overview

Window 6

Location 1,047,047 – 1,047,105
Length 58
Sequences 5
Columns 62
Reading direction forward
Mean pairwise identity 89.26
Shannon entropy 0.17908
G+C content 0.35006
Mean single sequence MFE -19.82
Consensus MFE -15.82
Energy contribution -15.26
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -2.62
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.79
SVM RNA-class probability 0.967634
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2L 1047047 58 + 23011544
UUCGCCCGUGUGUACAUAAUAUGUACAUAUAUGUAUAU----UAUAUGUGUAUAUAGUGAGU
(((((..(((....)))..((((((((((((((.....----))))))))))))))))))). ( -17.10, z-score =  -2.27, R)
>droSim1.chr2L 1017703 58 + 22036055
UUCGCCCGUGUGUACAUAAUAUGUACAUCUAUGUAUAU----UAUAUGUGUAUAUAGUGGGU
...(((((((((((((((..(((((((....)))))))----....)))))))))).))))) ( -20.80, z-score =  -3.25, R)
>droSec1.super_14 1000536 58 + 2068291
UUCGCCCGUGUGUACAUAAUAUGUACAUCUAUGUAUAU----UAUAUGUGUAUAUAGCGGGU
...(((((((((((((((..(((((((....)))))))----....)))))))))).))))) ( -22.60, z-score =  -3.77, R)
>droEre2.scaffold_4929 1088762 58 + 26641161
UUCGCCCGUGUGUACAUAACGCGUACAUAUAUGUGUGU----UCUAUGUGUAUAUAGUGGGU
...((((((((((((((((((((((....)))))))..----....)))))))))).))))) ( -20.00, z-score =  -2.22, R)
>droYak2.chr2L 1022843 62 + 22324452
UUCGCCCGUGUGUACAUAACGUGUACAUAUAUGUGUAUGUUCUAUAUGUGUAUAUAGUGGCU
...(((..((((((((((....(.((((((....)))))).)....))))))))))..))). ( -18.60, z-score =  -1.61, R)
>consensus
UUCGCCCGUGUGUACAUAAUAUGUACAUAUAUGUAUAU____UAUAUGUGUAUAUAGUGGGU
...(((((((((((((((..(((((((....)))))))........)))))))))).))))) (-15.82 = -15.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:38 2011