| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,893,109 – 17,893,203 |
| Length | 94 |
| Max. P | 0.904659 |
| Location | 17,893,109 – 17,893,203 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.13 |
| Shannon entropy | 0.56285 |
| G+C content | 0.47701 |
| Mean single sequence MFE | -23.06 |
| Consensus MFE | -8.77 |
| Energy contribution | -10.77 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17893109 94 - 22422827 -------UCCAUUAUUAUUUUCUGUUUGUGUGG-CCCUCUUUUGCCCCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA------- -------................(.(((.((((-((.((..((((....))))(((.((((((((...)))))))).))).......)).))))))))).).------- ( -25.10, z-score = -3.23, R) >droSim1.chrX_random 4593341 94 - 5698898 -------UCCAUUAUUAUUUUCUGCUUGUGUGG-CCCUCUUUUGCCCCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA------- -------................(.(((.((((-((.((..((((....))))(((.((((((((...)))))))).))).......)).))))))))).).------- ( -25.10, z-score = -3.16, R) >droSec1.super_8 193589 94 - 3762037 -------UCCAUUAUUAUUUUCUGCUUGUGUGG-CCCUCUUUUGCCCCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA------- -------................(.(((.((((-((.((..((((....))))(((.((((((((...)))))))).))).......)).))))))))).).------- ( -25.10, z-score = -3.16, R) >droYak2.chrX 16512278 94 - 21770863 -------UCCAUUAUUAUUUUCUGCUUGUGUGG-CCCUCGUUUGCCGCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA------- -------................(.(((.((((-((.(((.((((....))))(((.((((((((...)))))))).)))......))).))))))))).).------- ( -26.90, z-score = -2.63, R) >droEre2.scaffold_4690 8220770 95 - 18748788 -------UCCAUUAUUAUUUUCUGCUUAUGUGGCCCCUCUUUUGCCCCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA------- -------......................((((((..((..((((....))))(((.((((((((...)))))))).))).......)).))))))......------- ( -21.20, z-score = -2.31, R) >droAna3.scaffold_13335 1599726 77 + 3335858 ---------------UGUCAUUUAUUUGCGGCA-CCUUCU---------GCACUCGCAAGUCAAUCGAAUUGAUUGAUGAACCCUCCUAUGGAAACCGACCC------- ---------------.(((......((((((((-.....)---------))...)))))(((((((.....)))))))....((......)).....)))..------- ( -16.20, z-score = -1.55, R) >droPer1.super_21 148704 107 - 1645244 CACAGGGUUGUAUUUUGCGUUUUGCGUGUUUCUAUCGAUGAGUGCCAUAAGGCCUGCCGAUCAAACGA--UAACUGCUGGUUUCGUUGAAGUUUCUCUUUGAUUGAUGA ..(((((((((.....(((.....)))((((..((((...((.(((....)))))..)))).)))).)--))))).)))...((((..(((.....)))..).)))... ( -21.80, z-score = 1.11, R) >consensus _______UCCAUUAUUAUUUUCUGCUUGUGUGG_CCCUCUUUUGCCCCAGCAAUCGCCAGUCAAUCGAAUUGAUUGAUGAACCCACCGAUGGCCACCGACCA_______ .........................(((.((((.((.((..((((....))))(((.(((((((.....))))))).))).......)).))))))))).......... ( -8.77 = -10.77 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:46 2011