| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,882,981 – 17,883,096 |
| Length | 115 |
| Max. P | 0.826207 |
| Location | 17,882,981 – 17,883,096 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 84.37 |
| Shannon entropy | 0.24651 |
| G+C content | 0.43818 |
| Mean single sequence MFE | -27.62 |
| Consensus MFE | -22.92 |
| Energy contribution | -22.68 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17882981 115 + 22422827 UGGAAAGCGAAGGGCGGAAGGCCCAAAGUUUUCCUAGAUAUCCAAGUGACUUGCCAAACAAUACGGAUGGCAAAGUUAUGGUAAACCUCUCAUCUCUGCUGAAAGAUGAAACCAC .(((((((...((((.....))))...)))))))...........(((((((((((..(.....)..)))).)))))))((....))..((((((........))))))...... ( -35.10, z-score = -2.62, R) >droSim1.chrX_random 4582158 100 + 5698898 --------------UGGAAAGCGGAAAGUUUUCCCAGAUAUCCAAGUGACUUGCCGAACAA-ACGGAUGGCAAAGUUAUGGUAAACCUCUCAUCUCUGCUGAAAGAUGAAACCAC --------------.(((((((.....)))))))...........(((((((((((..(..-..)..)))).)))))))((....))..((((((........))))))...... ( -25.50, z-score = -1.68, R) >droSec1.super_8 183607 100 + 3762037 --------------UGGAAAGCGGAAAGUUUUCCCAGAUAUCCAAGUGACUUGCCGAACAA-ACGGAUGGCAAAGUUAUGGUAAACCUCUCAUCUCUGCUGAAUGAUGAAACCAC --------------.(((((((.....)))))))...........(((((((((((..(..-..)..)))).)))))))((....))..(((((..........)))))...... ( -24.30, z-score = -1.29, R) >droYak2.chrX 16501895 107 + 21770863 -------UGGAAACCGGAGAGUGGAAAGUUUUCCCAGAUAUUCAAGUGACUUGCCGAACAA-ACGGAUGGCAAACUUAUGGUAAACCUAUCAUCUUUUCGGAAAGAUGAAACCAC -------(((..((((..((((((((....))))................((((((..(..-..)..)))))))))).)))).......((((((((....))))))))..))). ( -25.60, z-score = -0.98, R) >consensus ______________CGGAAAGCGGAAAGUUUUCCCAGAUAUCCAAGUGACUUGCCGAACAA_ACGGAUGGCAAAGUUAUGGUAAACCUCUCAUCUCUGCUGAAAGAUGAAACCAC ...............(((((((.....)))))))...........(((((((((((..(.....)..)))).)))))))((....))..((((((........))))))...... (-22.92 = -22.68 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:44 2011