| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,879,607 – 17,879,661 |
| Length | 54 |
| Max. P | 0.980543 |
| Location | 17,879,607 – 17,879,661 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.06685 |
| G+C content | 0.46667 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -19.34 |
| Energy contribution | -19.58 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17879607 54 + 22422827 AAAGCCUUUUGGCUUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCAGUGUU .(((((....)))))..(((((...(((((....))))).....)))))..... ( -21.00, z-score = -2.68, R) >droEre2.scaffold_4690 8207702 54 + 18748788 AAAUCCUCUUGGCCUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCAGUAUU ....((....)).....(((((...(((((....))))).....)))))..... ( -14.60, z-score = -0.24, R) >droYak2.chrX 16498410 54 + 21770863 AAAGCCUUUUGGCUUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCGGUGUU .(((((....)))))..(((((...(((((....))))).....)))))..... ( -20.30, z-score = -2.24, R) >droSec1.super_8 180331 54 + 3762037 AAAGCCUUUUGGCUUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCAGUGUU .(((((....)))))..(((((...(((((....))))).....)))))..... ( -21.00, z-score = -2.68, R) >droSim1.chrX_random 4578870 54 + 5698898 AAAGCCUUUUGGCUUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCAGUGUU .(((((....)))))..(((((...(((((....))))).....)))))..... ( -21.00, z-score = -2.68, R) >consensus AAAGCCUUUUGGCUUGAUGGGAAUACCCUGCAAGUAGGGGAUAAUCCCAGUGUU .(((((....)))))..(((((...(((((....))))).....)))))..... (-19.34 = -19.58 + 0.24)
| Location | 17,879,607 – 17,879,661 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.06685 |
| G+C content | 0.46667 |
| Mean single sequence MFE | -16.54 |
| Consensus MFE | -15.86 |
| Energy contribution | -15.90 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17879607 54 - 22422827 AACACUGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAAGCCAAAAGGCUUU .....(((((.(((((..........))))).)))))..(((((....))))). ( -17.60, z-score = -2.41, R) >droEre2.scaffold_4690 8207702 54 - 18748788 AAUACUGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAGGCCAAGAGGAUUU .....(((((.(((((..........))))).))))).....((....)).... ( -12.60, z-score = 0.35, R) >droYak2.chrX 16498410 54 - 21770863 AACACCGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAAGCCAAAAGGCUUU ......((((.(((((..........))))).))))...(((((....))))). ( -17.30, z-score = -2.54, R) >droSec1.super_8 180331 54 - 3762037 AACACUGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAAGCCAAAAGGCUUU .....(((((.(((((..........))))).)))))..(((((....))))). ( -17.60, z-score = -2.41, R) >droSim1.chrX_random 4578870 54 - 5698898 AACACUGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAAGCCAAAAGGCUUU .....(((((.(((((..........))))).)))))..(((((....))))). ( -17.60, z-score = -2.41, R) >consensus AACACUGGGAUUAUCCCCUACUUGCAGGGUAUUCCCAUCAAGCCAAAAGGCUUU ......((((.(((((..........))))).))))...(((((....))))). (-15.86 = -15.90 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:43 2011