| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,878,857 – 17,878,971 |
| Length | 114 |
| Max. P | 0.599796 |
| Location | 17,878,857 – 17,878,971 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.26686 |
| G+C content | 0.44301 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -22.01 |
| Energy contribution | -21.90 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17878857 114 + 22422827 CCAUGAGAAAAUCACUUAGCGGCACCGAGAUCUUGAGCUGGAAUCUAAAACGUUGAGCACUUCGCCA--GAAGUGAAUCUGUGUGUA-UAUAUUCCUCAUUUUCAUAUUUCCUGAAU ..(((((((.....(((((((......((((((......)).))))....)))))))((((((....--))))))............-...........)))))))........... ( -23.00, z-score = -0.01, R) >droSim1.chrX_random 4578148 94 + 5698898 CCAUGAGAAAAUCACUUAGCGGCACCGAGAUCUUGAGCUGGAAUCUAAAACGCUGAGCACUUCGCUACGGAAGUGAAUCCUUGUGUUCUAGAAU----------------------- .((..((.......(((((((......((((((......)).))))....)))))))((((((......))))))....))..)).........----------------------- ( -24.50, z-score = -1.23, R) >droSec1.super_8 179600 94 + 3762037 CCAUGAGAAAAUCACUUAGCGGCACCGAGAUCUUGAGCUGGAAUCUAAAACGCUGAGCACUUCGCUACGGAAGUGAAUCCUUGUGUUCUAGAAC----------------------- .((..((.......(((((((......((((((......)).))))....)))))))((((((......))))))....))..)).........----------------------- ( -24.50, z-score = -1.30, R) >consensus CCAUGAGAAAAUCACUUAGCGGCACCGAGAUCUUGAGCUGGAAUCUAAAACGCUGAGCACUUCGCUACGGAAGUGAAUCCUUGUGUUCUAGAAU_______________________ .((((((.......(((((((......((((((......)).))))....)))))))((((((......))))))....))))))................................ (-22.01 = -21.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:42 2011