| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,870,934 – 17,871,053 |
| Length | 119 |
| Max. P | 0.835558 |
| Location | 17,870,934 – 17,871,053 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Shannon entropy | 0.34808 |
| G+C content | 0.39976 |
| Mean single sequence MFE | -31.37 |
| Consensus MFE | -21.90 |
| Energy contribution | -24.06 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17870934 119 - 22422827 UAAAAAUAUCGCUGGCAUUUGAGCGAUAUUUAUAUAAGCAUUGUUCCAUAUCGAAAUUUGAGGCAAAUGUAAUACACUUGUUGGCCGAGCUAAGAGAUUAGAGCUAAGCUUGUAAUGCC- ...((((((((((........)))))))))).(((((((...((((...(((.........(((.((((.........)))).))).........)))..))))...))))))).....- ( -28.67, z-score = -1.28, R) >droSim1.chrX_random 4572191 118 - 5698898 UAAAAAUAUCGCUGGCGUGUUAGCGAUAUUUAUAUAAGCAUUGUUCUACAGCGAAA-GUGGGGCAAUGGCAAAACACUUGUUGGCCGAGCUAAGAGAUAAGAGCUAAGCUUGUAAUGCC- ...((((((((((((....)))))))))))).(((((((((((((((((.......-))))))))))(((..(((....))).))).((((..........))))..))))))).....- ( -38.60, z-score = -3.10, R) >droSec1.super_8 171841 118 - 3762037 UAAAAAUAUCGCUGGCGUGUGAGCGAUAUUUAUAUAAGCAUUGUUCUACAUCGAAA-GUGGGGCAAUGGCAAAACACUUGUUGGCCGAGCUAAGAGAUAAGAGCUAAGCUUGUAAUGCC- ...((((((((((.(....).)))))))))).(((((((((((((((((.......-))))))))))(((..(((....))).))).((((..........))))..))))))).....- ( -37.50, z-score = -3.09, R) >droYak2.chrX 16489939 98 - 21770863 UAAAAAUAUCACUUGCGUGUGAGCGAUAUUUAUAUAAGCAUUGUUCCAUA---------GAGCCAA-------ACACUUGUUGGCCG-----AGGGCUAAGAGCUAAGCUUGUGGUGCC- ......((((((..(((((.(((((((.(((....))).)))))))))).---------(.(((((-------.(....))))))).-----..(((.....)))..))..))))))..- ( -24.60, z-score = -0.42, R) >droEre2.scaffold_4690 8197408 111 - 18748788 UAAAAACAUCGCUGUCGUGCUAGCGAUAUUUAUAUAAGCAUUGUUCUAUAUUCAA--AGUGGGCUAUUGCAAAACUCUUGUUGGCC-------GAGCUAAGAGCUAAGCUUGUAAUGCAU ...(((.(((((((......))))))).))).(((((((...(((((........--(((.(((((..((((.....)))))))))-------..))).)))))...)))))))...... ( -27.50, z-score = -0.63, R) >consensus UAAAAAUAUCGCUGGCGUGUGAGCGAUAUUUAUAUAAGCAUUGUUCUAUAUCGAAA_GUGGGGCAAUGGCAAAACACUUGUUGGCCGAGCUAAGAGAUAAGAGCUAAGCUUGUAAUGCC_ ...((((((((((((....)))))))))))).(((((((.(((((((((........)))))))))..............((((((..............).))))))))))))...... (-21.90 = -24.06 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:39 2011