| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,869,022 – 17,869,120 |
| Length | 98 |
| Max. P | 0.793977 |
| Location | 17,869,022 – 17,869,120 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 65.78 |
| Shannon entropy | 0.58167 |
| G+C content | 0.30934 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -8.04 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17869022 98 + 22422827 ------------UUUAGUCAGCAUGAAAUUCCGGUAGCU--UUUCACAUUUGGGCUUAAUUUCAAUAUUUGGCAUAGCAGUUUUACUUAUUGCUUAGUGUUUU-AUAUUGAUU ------------...((((....(((((..(.....)..--)))))......)))).....(((((((..(((((((((((.......))))))..)))))..-))))))).. ( -19.00, z-score = -1.10, R) >droYak2.chrX 16488207 92 + 21770863 ----------------GUCAGCC--AAGUU--GGUAGCUACUCUCAAAUUUUGAUUUAAUUUCAAUAUUUGGCAUAGCAGUUUUAGCUAUUGCUUGGUGUUUC-AUAUUGAUU ----------------....(((--((((.--((((((((....(((((.((((.......)))).)))))((...)).....))))))))))))))).....-......... ( -22.40, z-score = -2.13, R) >droSec1.super_8 169946 99 + 3762037 ------------UUCAGACAGCCUGAAAUUCAGGUAGCU--UCUAGCAUUUUGAUUUAAUUUCAAUAUUUGGCAUAGCAGUUUUACUUAUUGCUUGGUGUUUUUAUAUUGAAU ------------.(((((..(((((.....))))).((.--....))..)))))......((((((((..(((((((((((.......))))))..)))))...)))))))). ( -25.70, z-score = -2.93, R) >droSim1.chrX_random 4570294 99 + 5698898 ------------UUCAGACAGCCUGAAAUUCAGGUAGCU--UCUAGCAUUUUGAUUUAAUUUCAAUAUUUGGCAUAGCAGUUUUACUUAUUGCUUGGUGUUUUUAUAUUGAAU ------------.(((((..(((((.....))))).((.--....))..)))))......((((((((..(((((((((((.......))))))..)))))...)))))))). ( -25.70, z-score = -2.93, R) >anoGam1.chr3L 28120186 107 + 41284009 GUUAGAUUAUAUCUUGGUUUUACCUGAUUCACACUAAUUUAUUCGCGAUCU--AUUGAGUC---AUAUUGGUGUUGGAACUUAUAAUAAAUGCAUAAGGUUGU-AAGUUCGUU ..........(((..((.....)).)))..((((((((..(((((......--..))))).---..))))))))..(((((((((((...........)))))-))))))... ( -20.80, z-score = -0.82, R) >consensus ____________UUCAGUCAGCCUGAAAUUCAGGUAGCU__UCUAACAUUUUGAUUUAAUUUCAAUAUUUGGCAUAGCAGUUUUACUUAUUGCUUGGUGUUUU_AUAUUGAUU .............................................................(((((((..(((((.(((((.......)))))...)))))...))))))).. ( -8.04 = -9.00 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:38 2011