| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,745,269 – 11,745,359 |
| Length | 90 |
| Max. P | 0.585027 |
| Location | 11,745,269 – 11,745,359 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 86.51 |
| Shannon entropy | 0.22201 |
| G+C content | 0.50758 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -19.94 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11745269 90 - 23011544 UAUUUGCAUUGCGUGUGUUUUGGCUGUAUCACCUGUCCUCCUCCGAAGCACCUGAGCAUUGCCCACUGCCUAGUGACCAAUGUCCAUUGU------- .....(((.(((..(((((((((..(...(....)....)..)))))))))....))).))).((((....))))..((((....)))).------- ( -19.70, z-score = -0.57, R) >droEre2.scaffold_4929 12969495 97 + 26641161 UAUUUGCAUUGCGUGUGUUUUGCCUGGAUCACCUGUCCUACUCCAAAGCACCUAAACAUUGCCCAGUGCCCAGUGCCUAGUGCCCAAUGUCCAAUGU .....((((((.(.((((((((...((((.....)))).....)))))))))...((((((..((.(((.....))..).))..)))))).)))))) ( -20.80, z-score = -0.73, R) >droYak2.chr2L 8164548 96 - 22324452 UAUUUGCAUUGCGUGUGUUUUGCCUGGAUCACCUGUCCUCCUCCAAAGCACCUGAGCAUUG-CCAGUGCCCAGUGCCCAGUGCUCAAUGUCCAAUGU .....((((((.(.((((((((...((((.....)))).....)))))))))(((((((((-...(..(...)..).))))))))).....)))))) ( -28.80, z-score = -2.55, R) >droSec1.super_3 7135069 90 - 7220098 UAUUUGCAUUGUGUGUGUUUUGGCUGGAUCACCUGUCCUCCUCCAAAGCACCUGAGCAUUGCCCACUGCUUGGUGCCCAAUGUCCAUUGU------- .....((((((.(((((((((((..((((.....))))....)))))))))(..((((........))))..).)).)))))).......------- ( -27.60, z-score = -2.13, R) >droSim1.chr2L 11555522 90 - 22036055 UAUUUGCAUUGCGUGUGUUUUGGCUGGAUCACCUGUCCUCCUCCAAAGCACCUGAGCAUUGCCCACUGCCUGGUGCCCAAUGUCCAUUGU------- ............(.(((((((((..((((.....))))....))))))))))((..(((((..((((....))))..)))))..))....------- ( -25.80, z-score = -1.40, R) >consensus UAUUUGCAUUGCGUGUGUUUUGGCUGGAUCACCUGUCCUCCUCCAAAGCACCUGAGCAUUGCCCACUGCCUAGUGCCCAAUGUCCAUUGU_______ .....((((((.(((((((((((..((((.....))))....)))))))))(((.(((........))).))).)).)))))).............. (-19.94 = -19.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:31 2011