| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,864,762 – 17,864,858 |
| Length | 96 |
| Max. P | 0.722869 |
| Location | 17,864,762 – 17,864,858 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.17 |
| Shannon entropy | 0.11934 |
| G+C content | 0.40460 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -19.74 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17864762 96 + 22422827 -CAUUUUUUAAGAUCCCCUUGAAUAGUAGCCACUCUGAGCACUAUGGCAUCAUUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA -.(((.((((((.....)))))).))).(((.............(((((.......)))))...((((((((((......))).)))))))..))). ( -21.00, z-score = -1.58, R) >droEre2.scaffold_4690 8190240 97 + 18748788 AAUUUUUUUAGGAUCCGCUUGAAUAGUAGCCAAUCUGAGAACUAUGGCAUUAUUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA ......((((((.....)))))).....(((.............(((((.......)))))...((((((((((......))).)))))))..))). ( -19.80, z-score = -0.77, R) >droYak2.chrX 16483783 97 + 21770863 AAAAAGUGUAAGAUCCCCUUGAAUAGUAGCCACUCUAAGCACUAUGGCAUCCGUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA ........((((.....)))).......(((.............(((((.......)))))...((((((((((......))).)))))))..))). ( -18.30, z-score = -0.23, R) >droSec1.super_8 166163 96 + 3762037 -CAUUUUUUAAGAUCCCCUUGAAUAGUAGCCACUCUGAGCACUAUGGCAUCAUUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA -.(((.((((((.....)))))).))).(((.............(((((.......)))))...((((((((((......))).)))))))..))). ( -21.00, z-score = -1.58, R) >droSim1.chrX 13913724 96 + 17042790 -CAUUUUUUAGGAUCCCCUUGAAUAGUAGCCACUCUGAGCACUAUGGCAUCAUUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA -.(((.((((((.....)))))).))).(((.............(((((.......)))))...((((((((((......))).)))))))..))). ( -20.70, z-score = -0.88, R) >consensus _CAUUUUUUAAGAUCCCCUUGAAUAGUAGCCACUCUGAGCACUAUGGCAUCAUUUUUGCCACCCGCAUUUUUAAUGAGAUUUAUGAGAUGCCAGGCA ......((((((.....)))))).....(((.............(((((.......)))))...((((((((((......))).)))))))..))). (-19.74 = -19.70 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:37 2011