| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,847,802 – 17,847,915 |
| Length | 113 |
| Max. P | 0.602627 |
| Location | 17,847,802 – 17,847,915 |
|---|---|
| Length | 113 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.74 |
| Shannon entropy | 0.23264 |
| G+C content | 0.46428 |
| Mean single sequence MFE | -35.51 |
| Consensus MFE | -24.26 |
| Energy contribution | -24.88 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17847802 113 - 22422827 CCGUCUG-CCGCCGGCCAUGCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG-----CAUAGCAUCUGGAAAUUGAUUCGAG-CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA (((..((-(.(((((((((((.....))))))))(((((....)))))))-----)...)))..)))..........(((-((..(((....)))....((((....)))).).)))).. ( -38.60, z-score = -2.69, R) >droSim1.chrX 13897783 113 - 17042790 CCGUCUG-CCGCCGGCCAUGCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG-----CAUAGCAUCUGGAAAUUGAUUCGAG-CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA (((..((-(.(((((((((((.....))))))))(((((....)))))))-----)...)))..)))..........(((-((..(((....)))....((((....)))).).)))).. ( -38.60, z-score = -2.69, R) >droSec1.super_8 149338 113 - 3762037 CCGUCUG-CCGCCGGCCAUGCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG-----CAUAGCAUCUGGAAAUUGAUUCGAG-CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA (((..((-(.(((((((((((.....))))))))(((((....)))))))-----)...)))..)))..........(((-((..(((....)))....((((....)))).).)))).. ( -38.60, z-score = -2.69, R) >droYak2.chrX 16466485 113 - 21770863 CCGUCUG-CCGCCGGCCAUGCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG-----CAUAGCAUCUGGAAAUUGAUUCCAG-CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA .....((-((...((((((((.....))))))))(((((....)))))))-----)).(((..((((((.....))))))-..................((((....))))...)))... ( -39.20, z-score = -2.86, R) >droEre2.scaffold_4690 8174456 113 - 18748788 CCGUCUG-CCGCCGGCCAUUCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG-----CAUAGCAUCUGGAAAUUGAUUCGAG-CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA (((..((-(.(((((((((.(.....).))))))(((((....)))))))-----)...)))..)))..........(((-((..(((....)))....((((....)))).).)))).. ( -32.00, z-score = -1.06, R) >droAna3.scaffold_13335 1549067 112 + 3335858 AAGACCG-UCGGGGGGCAUUUAAUAUGAAUGCCAAUUGAAUAUUCAAUCG-----GAUAGCAUCUGGAAAAUGAUUCGAG-CCGAAAAGUAAUUAAAGACCAGGCCACUGGAG-GCUUAA (((.((.-((((..(((((((.....)))))))..((((((......(((-----(((...))))))......)))))).-))))..............((((....)))).)-)))).. ( -30.50, z-score = -1.72, R) >dp4.chrXL_group1e 5191129 120 - 12523060 CGAACCGCUCGCAGGCCAUCCAUUAUGCACCGCCAUUGAAUAUUCAAUCGGAGGCGAAGGCAUCUAGAAAUUGAUUCGAGUCCGAAAAGUAAUUAAAGACCAGGCCACUGGAGUGCUUUA .(((.(((((.((((((........(((..((((.((((........)))).))))...)))(((...(((((.((((....))))...)))))..)))...))))..))))))).))). ( -30.90, z-score = -0.66, R) >droPer1.super_21 99040 120 - 1645244 CGAACCGCUCGCAGGCCAUCCAUUAUGCACCGCCAUUGAAUAUUCAAUCGGAGGCGAAGGCAUCUGGAAAUUGAUUCGAGUCCGAAAAGUAAUUAAAGACCAGGCCACUGGAGUGCUUUA .(((.(((((.((((((.((((..((((..((((.((((........)))).))))...)))).))))(((((.((((....))))...)))))........))))..))))))).))). ( -35.70, z-score = -1.54, R) >consensus CCGUCUG_CCGCCGGCCAUGCAAUAUGCAUGGCCAUUGAAUAUUCAAUGG_____CAUAGCAUCUGGAAAUUGAUUCGAG_CCGAUAAGUAAUUAAAGACCAGGCCACUGGAGAGCUUAA .............((((((((.....))))))))(((((....)))))..........(((.(((...(((((..(((....)))....)))))..)))((((....))))...)))... (-24.26 = -24.88 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:35 2011