Locus 15185

Sequence ID dm3.chrX
Location 17,827,960 – 17,828,102
Length 142
Max. P 0.771704
window20917 window20918

overview

Window 7

Location 17,827,960 – 17,828,072
Length 112
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 72.30
Shannon entropy 0.49697
G+C content 0.51723
Mean single sequence MFE -29.46
Consensus MFE -16.00
Energy contribution -16.24
Covariance contribution 0.24
Combinations/Pair 1.35
Mean z-score -1.42
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.64
SVM RNA-class probability 0.771704
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17827960 112 - 22422827
GAUCUAAGUCCAGAUCCUUC-CCUACGAAAAGGGGGGCUUGGCACCUCCCCUUUUCUUGUCGAACACGCAGACAGACAACCCUACACACACACACCCGAGUCAUUUACCAUUA
(((((......)))))....-.....(((((((((((........))))))))))).((((.........))))(((......................)))........... ( -24.65, z-score =  -1.30, R)
>droSec1.super_8 129776 110 - 3762037
GAUCUAAGUCCAGACCCUUC-CCUCCGAAAAGGGGGGCUUGGCACCUCCCCUUUUCUUUUCGGACACACAGACAGACCACCC--CACACACACACUCGAGUCAUAUACCAUUA
.......((((.((....))-.....(((((((((((........))))))))))).....)))).....(((.((......--...........))..)))........... ( -23.53, z-score =  -0.95, R)
>droYak2.chrX 16446650 112 - 21770863
GAUCUAAGUCCAGACCCUUC-GUUUCGAAGAGGGGGGCUUGGCACCUCCCCUUUUCUUGUCGAACACGCAGACAGACAACCCCAUACACACAUACCCGAGUCAUUAACCAUUA
............(((...((-(....(((((((((((........)))))))))))(((((.........))))).....................))))))........... ( -24.80, z-score =  -0.69, R)
>droEre2.scaffold_4690 8153388 109 - 18748788
GAUCUAAGUCCAGACCCUUC-GCUCUGAAAAGGGGGGCUUGGCACCUCCCCUUUUCUUGUCGAACACGCAGACAGACAACC---CACACACAUACCCGAGUCAUAAACCAUUA
....................-((((.(((((((((((........)))))))))))(((((.........)))))......---.............))))............ ( -24.30, z-score =  -0.66, R)
>droVir3.scaffold_12928 4827822 110 + 7717345
UAUGCAAGUAUGGGUUAGUCAAGGCCUGAGAGCAGAGCUGUGCUUGAGAGCUUUCCUGUGAGCUCAC-CAGACGGGCGUGA--GCGCAGCUCUGCCUUAGUUGUUGGCAAUAA
.................(((((.(.(((((.((((((((((((((..((((((......)))))).(-(....))....))--))))))))))))))))).).)))))..... ( -50.00, z-score =  -3.49, R)
>consensus
GAUCUAAGUCCAGACCCUUC_CCUCCGAAAAGGGGGGCUUGGCACCUCCCCUUUUCUUGUCGAACACGCAGACAGACAACCC__CACACACAUACCCGAGUCAUUAACCAUUA
............(((.(.........(((((((((((........)))))))))))(((((.........)))))......................).)))........... (-16.00 = -16.24 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 17,828,000 – 17,828,102
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.87
Shannon entropy 0.49716
G+C content 0.50137
Mean single sequence MFE -34.22
Consensus MFE -15.30
Energy contribution -14.50
Covariance contribution -0.80
Combinations/Pair 1.41
Mean z-score -1.69
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.670407
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17828000 102 + 22422827
GUCUGCGUGUUCGACAAGA--AAAGGGGAGGUGCCAAGCCC--CCCUUUUCGUAGG----GAAGGAUCUGGACUUAGAUCUAGG---UAACUAGAGCCAAGGCUUAUAAUUAC-------
((((..(.((((.....((--(((((((.(((.....))))--)))))))).(((.----.(.(((((((....)))))))...---)..)))))))).))))..........------- ( -35.00, z-score =  -1.92, R)
>droSec1.super_8 129814 102 + 3762037
GUCUGUGUGUCCGAAAAGA--AAAGGGGAGGUGCCAAGCCC--CCCUUUUCGGAGG----GAAGGGUCUGGACUUAGAUCUAGG---UUACUAGAGACAAGGCUUAUAAUUAC-------
((((.(((((((.....((--(((((((.(((.....))))--))))))))....(----((....))))))).....(((((.---...))))).)))))))..........------- ( -35.50, z-score =  -1.76, R)
>droYak2.chrX 16446690 102 + 21770863
GUCUGCGUGUUCGACAAGA--AAAGGGGAGGUGCCAAGCCC--CCCUCUUCGAAAC----GAAGGGUCUGGACUUAGAUCUAGG---UAACUAGCGCCAAGGCUUAUGAUUAC-------
((((((((.((((....((--(.(((((.(((.....))))--)))).)))....)----)))(((((((....)))))))...---......))))..))))..........------- ( -32.70, z-score =  -1.04, R)
>droEre2.scaffold_4690 8153425 102 + 18748788
GUCUGCGUGUUCGACAAGA--AAAGGGGAGGUGCCAAGCCC--CCCUUUUCAGAGC----GAAGGGUCUGGACUUAGAUCUAGG---UAACUAGAGCCAAGGCUUAUAAUUAU-------
((((.....((((....((--(((((((.(((.....))))--))))))))....)----)))((.((((((((((....))))---)..))))).)).))))..........------- ( -38.10, z-score =  -2.83, R)
>droVir3.scaffold_12928 4827852 120 - 7717345
UCACGCCCGUCUGGUGAGCUCACAGGAAAGCUCUCAAGCACAGCUCUGCUCUCAGGCCUUGACUAACCCAUACUUGCAUAGAGUACCCAACUCUAACUAAUCGUCAUGGCCCAUGCAUUC
....((..(..(((.(((((........))))))))..)...))..(((.....((((.((((.....((....))..((((((.....)))))).......)))).))))...)))... ( -29.80, z-score =  -0.89, R)
>consensus
GUCUGCGUGUUCGACAAGA__AAAGGGGAGGUGCCAAGCCC__CCCUUUUCGGAGG____GAAGGGUCUGGACUUAGAUCUAGG___UAACUAGAGCCAAGGCUUAUAAUUAC_______
((((....(((((((........((((..(((.....)))...))))((((.........)))).))).)))).....(((((.......)))))....))))................. (-15.30 = -14.50 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:32 2011