| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,827,737 – 17,827,839 |
| Length | 102 |
| Max. P | 0.922444 |
| Location | 17,827,737 – 17,827,839 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 68.88 |
| Shannon entropy | 0.53433 |
| G+C content | 0.44504 |
| Mean single sequence MFE | -31.06 |
| Consensus MFE | -13.24 |
| Energy contribution | -13.84 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17827737 102 + 22422827 UCGUUACUUUUCUCACUCGAUUG----AUCGCUAUAUCUGCGAU-UAGUGUGUGCUCACGGCGAUAGUGUGUGUAUG-CAUUUCUUUUUGGGGGAG--UGUGGGGGGAGG-- ......(((..(((((...((((----(((((.......)))))-))))((((((.((((.(....))))).)))))-)(((((((....))))))--))))))..))).-- ( -36.10, z-score = -3.33, R) >droSec1.super_8 129555 101 + 3762037 UCGUUACUUUUAUCACUCGAUUG----AUCGCUAUAUCUGCGAU-UAGUAAGUGCUCACGGCGAUAGUAUGUGUAUG-CAUUUCUUUUGGGGGAG---UGUGGGGGUAGG-- ...(((((((((.(((((.((((----(((((.......)))))-))))((((((.((((((....)).))))...)-))))).........)))---))))))))))).-- ( -32.20, z-score = -2.73, R) >droYak2.chrX 16446439 102 + 21770863 UCGUUACUUUUCUCACUCGAUUU----AUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUG-CAUUUCUUUUGGGGGGAGGUUGUGGGGGAGGG-- ......(((..(((((.......----..(((((((((...)))))))))(.(.((((.(((((.(---(((....)-))).))))))))).).)....)))))..))).-- ( -30.70, z-score = -2.03, R) >droEre2.scaffold_4690 8153199 99 + 18748788 UCGUUUCUUUUCUCACUCGAUUC----AUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUG-CAUUUCUUUUGGGGAAG---UGUGGGGGGAGG-- ......(((..(((((.(....(----(((((((((((...))))))))).)))((((.(((((.(---(((....)-))).)))))))))...)---.)))))..))).-- ( -32.60, z-score = -2.87, R) >droVir3.scaffold_12928 4827558 112 - 7717345 UUUUUUCUUCUGUUAGUCAACACUAGAGUUGGUCACUAUUUGAAACAAUGCGACUGAACUGCUCUAGACUAUGAACGAUACUAGUUGCUAGUGGAUGACAUGUAGUAGGAGU ......(((((((((((((.(.(((((((.((((.(...(((...))).).)))).....)))))))...........((((((...))))))).))))...))))))))). ( -23.70, z-score = 0.68, R) >consensus UCGUUACUUUUCUCACUCGAUUC____AUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGCGAUAG__UGUGUAUG_CAUUUCUUUUGGGGGGA___UGUGGGGGAAGG__ ......((((((((((.((((......)))).....(((.(((...(((((((((.((...........)).))))).))))....))).)))......))))))))))... (-13.24 = -13.84 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:31 2011