Locus 15183

Sequence ID dm3.chrX
Location 17,809,528 – 17,809,625
Length 97
Max. P 0.506234
window20915

overview

Window 5

Location 17,809,528 – 17,809,625
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 84.88
Shannon entropy 0.24449
G+C content 0.38341
Mean single sequence MFE -22.80
Consensus MFE -18.88
Energy contribution -19.25
Covariance contribution 0.38
Combinations/Pair 1.23
Mean z-score -1.21
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.506234
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17809528 97 + 22422827
UUUACCGUCUGGGCUUGGCGAGUCUAGAGUAAUAAUAAUACAAGUUAUAACUAUUGCGCCAAGACUCGCAUGGUUUUUCAUCGGCUUCUGUUGACAU
...(((((.(((((((((((.......(((.(((((.......))))).)))....))))))).)))).)))))......(((((....)))))... ( -28.00, z-score =  -2.48, R)
>droEre2.scaffold_4690 8135344 88 + 18748788
---------UGGACUUGCCGAGCAUGGAGUAAUAAUAAUAAAAGUUAUAACUAUUGCGUUGAGAUUUGUUUUGUUUUUUAUCGACUUCUUUUGACAU
---------.((.....))..(((...(((.(((((.......))))).)))..)))((..(((...(((............)))...)))..)).. ( -12.00, z-score =   0.62, R)
>droSec1.super_8 110026 97 + 3762037
UUUACCGUCUGGGCUUGGCGAGCAUAGAGUAAUGAUAAUAAAAGUUAUAACUAUUGCGCCAAGACUCGCAUGGUUUUUCAGCGGCUUCUUUUGACUU
...(((((.((((((((((..(((...(((.(((((.......))))).)))..))))))))).)))).)))))....................... ( -25.60, z-score =  -1.25, R)
>droSim1.chrX 13860030 97 + 17042790
UUUACCGUCUGGGCUUGGCGAGCAUAGAGUAAUGAUAAUAAAAGUUAUAACUAUUGCGCCAAGACUCGCAUGGUUUUUCAUCGGCUUCUUUUGACAU
...(((((.((((((((((..(((...(((.(((((.......))))).)))..))))))))).)))).)))))....................... ( -25.60, z-score =  -1.72, R)
>consensus
UUUACCGUCUGGGCUUGGCGAGCAUAGAGUAAUAAUAAUAAAAGUUAUAACUAUUGCGCCAAGACUCGCAUGGUUUUUCAUCGGCUUCUUUUGACAU
...(((((.((((((((((..(((...(((.(((((.......))))).)))..))))))))).)))).)))))....................... (-18.88 = -19.25 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:30 2011