Locus 15182

Sequence ID dm3.chrX
Location 17,805,794 – 17,805,876
Length 82
Max. P 0.560351
window20914

overview

Window 4

Location 17,805,794 – 17,805,876
Length 82
Sequences 5
Columns 84
Reading direction reverse
Mean pairwise identity 92.90
Shannon entropy 0.12272
G+C content 0.42374
Mean single sequence MFE -21.14
Consensus MFE -19.22
Energy contribution -19.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.14
SVM RNA-class probability 0.560351
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17805794 82 - 22422827
CGCACUU--UAAAAAAAAGAGCUAAAAUAAGGUGUGUAAGGUAAGGGCCAGGCCCCUGAGCCAGGUAAUUAAUGCACCUUGGAA
.((.(((--(.....)))).)).....((((((((((....((..((((((....))).)))...))....))))))))))... ( -24.70, z-score =  -1.76, R)
>droSim1.chrX 13856249 84 - 17042790
CGCACUUAAAAAAAAAAAAAGCUCAAAUAAGGUGUGUAGAGUAAGGGCCGGGCCCAUGAGCCAGGUAAUUAAUGCACCUUGGAA
...........................((((((((((....(((..(((.(((......))).)))..)))))))))))))... ( -20.60, z-score =  -0.90, R)
>droSec1.super_8 106203 82 - 3762037
CGCACUU--AAAAAAAAAUAGCUCAAAUAAGGUGUGUAGAGUAAGGGCCGGGCCCAUGAGCCAGGUAAUUAAUGCACCUUGGAA
.......--..................((((((((((....(((..(((.(((......))).)))..)))))))))))))... ( -20.60, z-score =  -0.72, R)
>droYak2.chrX 16424378 83 - 21770863
CGCACUU-AAAAAAAAAAGAGAUCAAAUAAGGUGUGUAAAGUAAGGGCCGGGCCCAUGAGCCAGGUAAUUAAUGCACCUUUGAA
.......-..............((((...((((((((....(((..(((.(((......))).)))..))))))))))))))). ( -19.90, z-score =  -1.45, R)
>droEre2.scaffold_4690 8131535 82 - 18748788
CGCACUU--AAAAAAAAAGAUAUCAAAUAAGGUGUGUAAAGUAAGGGCCGGGCCCAUGAGCCAGGUAAUUAAUGCACCUUUGAA
.......--.............((((...((((((((....(((..(((.(((......))).)))..))))))))))))))). ( -19.90, z-score =  -1.35, R)
>consensus
CGCACUU__AAAAAAAAAGAGCUCAAAUAAGGUGUGUAAAGUAAGGGCCGGGCCCAUGAGCCAGGUAAUUAAUGCACCUUGGAA
...........................((((((((((....(((..(((.(((......))).)))..)))))))))))))... (-19.22 = -19.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:29 2011