| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,804,936 – 17,805,027 |
| Length | 91 |
| Max. P | 0.568797 |
| Location | 17,804,936 – 17,805,027 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.49 |
| Shannon entropy | 0.55573 |
| G+C content | 0.54283 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -16.93 |
| Energy contribution | -16.83 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17804936 91 - 22422827 GCUCGCAGUAUGCUCGAUAUCUGGUCGAUCGGCCAGGAACAAGCGCACA-------UAUGCUGGUGAGC-----------UGGAAAGAUCUUAUCGCACUUGGCAUGUG (((((.((....)))))..(((((((....))))))).......)).((-------((((((.((((..-----------.(((....)))..))))....)))))))) ( -28.70, z-score = -0.37, R) >droAna3.scaffold_13335 1499092 88 + 3335858 CCCCGCAGCACGUCCGUUAAUUUGG-----AGCCAGAGCCGGUGGU----------GGUGUUGGUGGCAA------GAUGUUAUCGGCCAAAGACACAUCCAGCAUGUA ....(((((....(((....((((.-----...))))..)))(((.----------.(((((..((((..------(((...))).))))..)))))..))))).))). ( -25.90, z-score = 0.26, R) >droEre2.scaffold_4690 8130551 102 - 18748788 GCUCGCAAUAUGCCCGAUAUCUGGCCGAUCGGCCAGAAACGAGCGUACA-------UAUGCUGGUGGGCCUUUGGCGGUGCAGAAAGAUCUUAUCGCACUUGGCAUGUG (((..(((...((((....(((((((....))))))).((.(((((...-------.))))).))))))..)))((((((.(((....)))))))))....)))..... ( -40.30, z-score = -2.19, R) >droYak2.chrX 16423469 109 - 21770863 ACUCGCCAUAUGCCCGAUAUCUGGACGAUCGGCUAGAAACGAGCAUACAUAUGCUGUAUGCUGGUGGGCCUUUGGCGGCGCAGAAAGAUCUUAUCGCACUUGGCAUGUA ...(((((...((((....(((((.(....).))))).((.((((((((.....)))))))).))))))...)))))(((.(((....)))...)))............ ( -37.90, z-score = -1.46, R) >droSec1.super_8 105343 91 - 3762037 GAUCGCCAUAUGCCCGAUAUCUGGCCGAUCGGCCAGGAAAGAGCGCACA-------UAUGCUGGUGGGC-----------UGGAAAGAUCUUAUCGCACUUGCCAUGUG ((((.(((...(((((...(((((((....)))))))....((((....-------..))))..)))))-----------)))...)))).(((.((....)).))).. ( -31.40, z-score = -0.88, R) >droSim1.chrX 13855386 91 - 17042790 GCUCGCUAUAUGCCCGAUAUCUGGCCGAUCGGCCAGGAACGAGCGCACA-------UAUGCUGGUGGGC-----------UGGAAAGAUCUUAUCGCACUUGCCAUGUG ((((((.....))......(((((((....)))))))...)))).((((-------(..((.((((.(.-----------.(((....)))...).)))).)).))))) ( -32.60, z-score = -1.20, R) >consensus GCUCGCAAUAUGCCCGAUAUCUGGCCGAUCGGCCAGAAACGAGCGCACA_______UAUGCUGGUGGGC___________UGGAAAGAUCUUAUCGCACUUGGCAUGUG .......(((((((((((((((((((....))))))).....((.(((...............))).))......................))))).....))))))). (-16.93 = -16.83 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:28 2011