Locus 15180

Sequence ID dm3.chrX
Location 17,801,654 – 17,801,756
Length 102
Max. P 0.930651
window20911 window20912

overview

Window 1

Location 17,801,654 – 17,801,756
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.02
Shannon entropy 0.22361
G+C content 0.47950
Mean single sequence MFE -27.66
Consensus MFE -22.64
Energy contribution -22.48
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.10
SVM RNA-class probability 0.890988
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17801654 102 + 22422827
GCCAAGUAAUUUCACCUUUCCAUGUGUGACCAUUGCAGCUGCACCGCAAUCUAAGGCCCAGCCCGCGCUGUGGUCACACUGAC---AAAUAAAAAAAAACAAGAC
....................((.(((((((((((((.((((..((.........))..))))..)))..))))))))))))..---................... ( -26.80, z-score =  -2.33, R)
>droEre2.scaffold_4690 8127332 102 + 18748788
GCCAAGGGAGUUCAUCUUUUCAAGUGUGACCAUGGCAGCUGCACCUCGGUUUAUGGCCUGGCCCCCGCUGUGGUCACACUGAC---AAAUAAAAAAAAACAAGAC
...((((((.....))))))..(((((((((((((((((((.....)))))...(((...)))...))))))))))))))...---................... ( -30.30, z-score =  -1.08, R)
>droYak2.chrX 16420139 105 + 21770863
GCCAAGUGAUUUCAUCUUCCGCAGUGUGACCAUUGCAGCUGCACUUCGGCUUAAGGCCUAGCCCCCACUGUGGUCACACUGACCGAAUAAAAAAAAAAACAAGAC
................(((.((((((((((((((((....)))....((((........))))......)))))))))))).).))).................. ( -29.10, z-score =  -2.39, R)
>droSec1.super_8 102028 102 + 3762037
GCCAAUUGACUUCAUCUUUCCAUGUGUGACCAUUGCAGCUGCACCGCGAUUUAAGGCCCAGCCCGUGCUGUGGUCACACUGAC---AAAUAAAAAAAAACAAGAC
....................((.((((((((((.(((((((..((.........))..))))...))).))))))))))))..---................... ( -28.20, z-score =  -2.41, R)
>droSim1.chrX 13852075 102 + 17042790
GCCAAUUGACUUCAUCUUUCCAUGUGUGACCAUUGCAGCUGCACCGCGAUUUAAGGCCCAACCCGUGCUGUGGUCACACUGAC---AAAUAAAAAAAAACAAGAC
....................((.((((((((((.(((((......)).......((......)).))).))))))))))))..---................... ( -23.90, z-score =  -1.43, R)
>consensus
GCCAAGUGACUUCAUCUUUCCAUGUGUGACCAUUGCAGCUGCACCGCGAUUUAAGGCCCAGCCCGCGCUGUGGUCACACUGAC___AAAUAAAAAAAAACAAGAC
.......................((((((((((.((.((((..((.........))..))))....)).)))))))))).......................... (-22.64 = -22.48 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 17,801,654 – 17,801,756
Length 102
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 87.02
Shannon entropy 0.22361
G+C content 0.47950
Mean single sequence MFE -35.52
Consensus MFE -27.68
Energy contribution -28.68
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -2.25
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.36
SVM RNA-class probability 0.930651
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 17801654 102 - 22422827
GUCUUGUUUUUUUUUAUUU---GUCAGUGUGACCACAGCGCGGGCUGGGCCUUAGAUUGCGGUGCAGCUGCAAUGGUCACACAUGGAAAGGUGAAAUUACUUGGC
(((..((....((((((((---.((.(((((((((..((...(((((.(((.........))).)))))))..)))))))))...)).))))))))..))..))) ( -37.30, z-score =  -2.79, R)
>droEre2.scaffold_4690 8127332 102 - 18748788
GUCUUGUUUUUUUUUAUUU---GUCAGUGUGACCACAGCGGGGGCCAGGCCAUAAACCGAGGUGCAGCUGCCAUGGUCACACUUGAAAAGAUGAACUCCCUUGGC
............(((((((---.((((((((((((((((..(.(((.((.......))..))).).))))...))))))))).)))..))))))).......... ( -32.40, z-score =  -0.94, R)
>droYak2.chrX 16420139 105 - 21770863
GUCUUGUUUUUUUUUUUAUUCGGUCAGUGUGACCACAGUGGGGGCUAGGCCUUAAGCCGAAGUGCAGCUGCAAUGGUCACACUGCGGAAGAUGAAAUCACUUGGC
(((..((..((((.....(((.(.(((((((((((((((..(.(((.(((.....)))..))).).))))...)))))))))))).)))...))))..))..))) ( -39.90, z-score =  -3.18, R)
>droSec1.super_8 102028 102 - 3762037
GUCUUGUUUUUUUUUAUUU---GUCAGUGUGACCACAGCACGGGCUGGGCCUUAAAUCGCGGUGCAGCUGCAAUGGUCACACAUGGAAAGAUGAAGUCAAUUGGC
(((..(((...((((((((---.((.(((((((((..(((...((((.(((.........))).)))))))..)))))))))...)).))))))))..))).))) ( -35.20, z-score =  -2.42, R)
>droSim1.chrX 13852075 102 - 17042790
GUCUUGUUUUUUUUUAUUU---GUCAGUGUGACCACAGCACGGGUUGGGCCUUAAAUCGCGGUGCAGCUGCAAUGGUCACACAUGGAAAGAUGAAGUCAAUUGGC
(((..(((...((((((((---.((.(((((((((..(((...((((.(((.........))).)))))))..)))))))))...)).))))))))..))).))) ( -32.80, z-score =  -1.94, R)
>consensus
GUCUUGUUUUUUUUUAUUU___GUCAGUGUGACCACAGCGCGGGCUGGGCCUUAAAUCGCGGUGCAGCUGCAAUGGUCACACAUGGAAAGAUGAAAUCACUUGGC
(((........((((((((....((((((((((((..((...(((((.(((.........))).)))))))..))))))))).)))..))))))))......))) (-27.68 = -28.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:27 2011