| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,739,109 – 11,739,217 |
| Length | 108 |
| Max. P | 0.724554 |
| Location | 11,739,109 – 11,739,217 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.86 |
| Shannon entropy | 0.61109 |
| G+C content | 0.47679 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -12.21 |
| Energy contribution | -12.99 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11739109 108 + 23011544 CAAUUCUUUCCGUUAUCGCUGUGAAUAAGUAGUCGAGUAAGAGACUCCCUCAUUACUCAUACGCCACGUUGGCAAACAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC ..((((....((....))....))))..(((...(((((((((.....))).)))))).))).....((((((.(((((((.((....))))))))).)))).))... ( -30.60, z-score = -2.96, R) >droSim1.chr2L 11549136 108 + 22036055 CAAUUCAUUCCGUUACCGCUGUGACUAAGUUGUCGAGUAAAAGACUCUCACGUUACUCAUACGCCACGUUGGCAAACAUGCUGCUAAUGCGCGUGUUAGCCACACUCC .................(((((((.(((..((..((((.....)))).))..))).))))).))...((((((.(((((((.((....))))))))).)))).))... ( -28.20, z-score = -1.59, R) >droSec1.super_3 7128867 108 + 7220098 CAAUUCAUUCCCUUACCGCUGUGACUAAGUAGCCGAGUAAAAGACUCUCACGUUACUCAUACGCCACGUUGGCAAGCAUGCCGCUAAUGCGCGUGUUAGCCACACUCC .................(((((((....(((((.((((.....))))....)))))))))).))...((((((.(((((((.((....))))))))).)))).))... ( -28.90, z-score = -2.05, R) >droYak2.chr2L 8158266 100 + 22324452 CAGUUCAAUCCGUUGCCGCAGUGACUACGU--------GAAAUACUACUGCGUUACUCAUACGCCACGUUGGCAAUCAUGCUGCUAAUGCGCGUGUUAGCCGUAUUCC .............((((((((((.......--------.......)))))))...((.((((((..((((((((.......)))))))).)))))).))..))).... ( -24.44, z-score = 0.30, R) >droEre2.scaffold_4929 12963462 100 - 26641161 CAAUUAAUUCCGUUGCCGCAGUGACUAAUU--------GAAAGACUACUGCGUUACCCAUACGCCACGUUGGCAAUCAUGUUGAUAAUGCGCGUGUUAGCCGUAUUCC ..((((((...(((((((..(((.....((--------....)).....((((.......)))))))..)))))))...))))))((((((.((....)))))))).. ( -22.80, z-score = -0.44, R) >droAna3.scaffold_12916 9447155 85 - 16180835 -------------UGGUGCAAAAAUUUGCAGUCGGGAGUGGUGAUUA--AUUUUAUGGCUAUGCCACGUUGGCAAUCUGUUGGCUAAUAAGCGUGUUGGC-------- -------------.....(((....((((...((((.(((((.((..--.....)).))))).)).))...))))....)))(((((((....)))))))-------- ( -20.80, z-score = 0.08, R) >consensus CAAUUCAUUCCGUUACCGCAGUGACUAAGU_G_CGAGUAAAAGACUACCACGUUACUCAUACGCCACGUUGGCAAUCAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC .................((.(((((..........................)))))..((((((..((((((((.......)))))))).))))))..))........ (-12.21 = -12.99 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:30 2011