| Sequence ID | dm3.chrX |
|---|---|
| Location | 17,800,536 – 17,800,640 |
| Length | 104 |
| Max. P | 0.709933 |
| Location | 17,800,536 – 17,800,640 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.73 |
| Shannon entropy | 0.38734 |
| G+C content | 0.30705 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -9.84 |
| Energy contribution | -9.96 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 17800536 104 + 22422827 --------------UAAUUUUUACUAUGCUUAUAUAAGAUAAGUAUUAUGCAACUAAUGGAAAAAGGGAAUCUUUAAGACGCCUCAUUCCCUACUUCCAACUAUGUAAAUACAACCAU --------------.....(((((.((((((((.....))))))))...........(((((..(((((((..............)))))))..))))).....)))))......... ( -20.04, z-score = -2.95, R) >droSim1.chrX 13850935 108 + 17042790 ---------AAAUAGAAACUAUGCU-UACUUAUAUAAGAUAAGUAUUAUGCAACUUAUGGAAAAAGGGAACCCUCAAGAUGCCUCAUUUCAUACUUCCAACUAUUUAAAUACAACCAU ---------((((((......(((.-(((((((.....)))))))....)))...(((((((..(((.(.(......).).)))..))))))).......))))))............ ( -17.90, z-score = -2.18, R) >droSec1.super_8 100881 113 + 3762037 ----ACUAUCAAUAGAAACUAUGCU-UACUUAUAUAAGAUAAGUAUUAUGCAACUUAUGGAAAAAGGGAACCCUCAAGAUGCCUCAUUUCAUACUUCCAACUAUGUAAAUACAACCAU ----.......((((......(((.-(((((((.....)))))))....)))...(((((((..(((.(.(......).).)))..))))))).......)))).............. ( -16.40, z-score = -0.84, R) >droEre2.scaffold_4690 8126232 108 + 18748788 UGGUAAUCUAAAUUAUUACCAUGCU-UACUAAUAUAAGAUAAGUAUUAUGCAACUAAUGGAAAAAUGGAA-CCUCAAGACGCCUCAUUUCCUAUUUCCAGCAACAACCAU-------- .((((((.......))))))(((((-((((......)).)))))))..(((......((((((...((((-.....((....))...))))..)))))))))........-------- ( -17.40, z-score = -1.46, R) >consensus _________AAAUAGAAACUAUGCU_UACUUAUAUAAGAUAAGUAUUAUGCAACUAAUGGAAAAAGGGAACCCUCAAGACGCCUCAUUUCAUACUUCCAACUAUGUAAAUACAACCAU .....................(((..(((((((.....)))))))....))).....(((((....((((................))))....)))))................... ( -9.84 = -9.96 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:54:26 2011